HHsearch alignment for GI: 254780945 and conserved domain: PRK04537
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional.
Probab=99.93 E-value=1e-21 Score=189.96 Aligned_cols=317 Identities=21% Similarity=0.260 Sum_probs=223.4
Q ss_pred CCCHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHH----------HHCCEE
Q ss_conf 775789999863024-679889999999998410013430788621442236999999733444----------305458
Q gi|254780945|r 257 VEGKIAQKILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE----------AGGQAV 325 (700)
Q Consensus 257 ~~~~~~~~f~~~LPF-~LT~~Q~~ai~eI~~Dl~~~~pM~RLLQGDVGSGKTiVA~~A~l~~~~----------~G~Q~a 325 (700)
T Consensus 16 L~~~Ll~a-L~~~Gf~~PTpIQ~~aIP~iL~G----k--Dvi~~A~TGSGKTLAYlLPiL~~Ll~~~~l~~~~~~~p~aL 88 (574)
T PRK04537 16 LHPALVAG-LESAGFTRCTPIQALTLPVALPG----G--DVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRAL 88 (574)
T ss_pred CCHHHHHH-HHHCCCCCCCHHHHHHHHHHHCC----C--CEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEE
T ss_conf 89999999-99779998999999999999579----9--88998489888999999999999983744345778996199
Q ss_pred EEEHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECH-HHC----CCC-CCCCCCCEEE
Q ss_conf 8612799999999862110145786589962464225667687762134754864111-201----334-5544441788
Q gi|254780945|r 326 IMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-ALF----QDS-IQYYKLILVI 399 (700)
Q Consensus 326 lMaPTEILA~QH~~~~~~~~~~~~i~v~lLtg~~~~~er~~i~~~i~~G~~~iiIGTH-AL~----q~~-v~F~~LgLvV 399 (700)
T Consensus 89 ILvPTRELA~QI~~~~~~l~~~~~lr~~~l~GG~~~~~q~~~---L~~-g~dIVVaTPGRLld~L~~~~~~~L~~vk~LV 164 (574)
T PRK04537 89 ILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQREL---LQQ-GVDVIIATPGRLIDYVKQHKVVSLHACEICV 164 (574)
T ss_pred EECCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHH---HCC-CCCEEEECHHHHHHHHHHCCCCCCCCEEEEE
T ss_conf 977989999999999999864589779999799668899998---735-9998998989999999817986533315899
Q ss_pred ECCCCC-----CCHHHHHHHHHCC--CCCCCEEECHHHHHHHHHHH--HHHCCCHHHHC--CCCCCCCCCEEEEEE--CC
Q ss_conf 521013-----3568899874025--67761010101322789999--75201011110--235576662079997--02
Q gi|254780945|r 400 VDEQHR-----FGVQQRLKLTQKA--TAPHVLLMTATPIPRTLVLT--SLGDIDISKIT--EKPAGRKPIKTVIIP--IN 466 (700)
Q Consensus 400 iDEQHR-----FGV~QR~~L~~Kg--~~ph~L~MtATPIPRTLal~--~ygdldvS~i~--e~P~gR~~I~T~~~~--~~ 466 (700)
T Consensus 165 LDEAD~LLd~gF~~di~~IL~~lP~~~~rQ~iLfSATl~~~V~~la~~~l~~P~~i~v~~~~~~~--~~I~Q~~~~~~~~ 242 (574)
T PRK04537 165 LDEADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITA--ARVRQRIYFPSDE 242 (574)
T ss_pred ECCCHHHHCCCCHHHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCC--CCEEEEEEECCHH
T ss_conf 62732654287799999999966655685589998327779999999977998699965665457--7603899977778
Q ss_pred -CHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHCCCEEEE
Q ss_conf -0026899997631038738999712012211121014666666686637103120146998999999999755986999
Q gi|254780945|r 467 -RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLL 545 (700)
Q Consensus 467 -~~~~~~~~i~~~l~~g~q~y~VcPlIeese~~~~~~~~~~~~~l~~~~~~~v~~lHGkm~~~ek~~~m~~F~~g~~~iL 545 (700)
T Consensus 243 ~K~~~L~~LL~~--~~~~k~IIF~nT~--------~~ve~l~~~L~~~-g~~v~~LHG~lsQ~eR~~~L~~Fk~G~~~VL 311 (574)
T PRK04537 243 EKQTLLLGLLSR--SEGARTMVFVNTK--------AFVERVARTLERH-GYRVGVLSGDVPQKKRESLLNRFQKGQLEIL 311 (574)
T ss_pred HHHHHHHHHHHH--CCCCCCEEECCHH--------HHHHHHHHHHHHC-CCCEEEEECCCCHHHHHHHHHHHHCCCCCEE
T ss_conf 999999999972--6776511533418--------9999999999977-9968997099999999999999976999799
Q ss_pred EECHHHHCCCCCCCCCEEEEECHHHCCHHHHHHHHHCCCCCCCCEEEEEEECC
Q ss_conf 98003410468887658998585254746887730116678983599997088
Q gi|254780945|r 546 IATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP 598 (700)
Q Consensus 546 vaTtviEVGvdvpna~~mvI~~aerfGLsqLHQLRGRVGRg~~~s~c~l~~~~ 598 (700)
T Consensus 312 VaTDVAARGIDIp~V~~VINYDlP~~~e~YVHR-IGRTGRaGr~G~AITfv~~ 363 (574)
T PRK04537 312 VATDVAARGLHIDGVKYVYNYDLPFDAEDYVHR-IGRTARLGEEGDAISFACE 363 (574)
T ss_pred EECCCCCCCCCCCCCCEEEEECCCCCHHHHHCC-CCHHHCCCCCEEEEEEECH
T ss_conf 773500233571469979995796982141124-5350378993359998777