HHsearch alignment for GI: 254780945 and conserved domain: PRK04837
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional.
Probab=99.93 E-value=2.9e-22 Score=194.14 Aligned_cols=331 Identities=20% Similarity=0.232 Sum_probs=226.1
Q ss_pred CCCCCHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHH----------HHCC
Q ss_conf 78775789999863024-679889999999998410013430788621442236999999733444----------3054
Q gi|254780945|r 255 INVEGKIAQKILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE----------AGGQ 323 (700)
Q Consensus 255 ~~~~~~~~~~f~~~LPF-~LT~~Q~~ai~eI~~Dl~~~~pM~RLLQGDVGSGKTiVA~~A~l~~~~----------~G~Q 323 (700)
T Consensus 14 lgL~~~ll~~L-~~~g~~~pTpIQ~~aIP~il~G------~Dvi~~A~TGSGKTlAfllPil~~ll~~~~~~~~~~~~p~ 86 (423)
T PRK04837 14 FALHPKVVEAL-EKKGFEYCTPIQALALPLTLAG------RDVAGQAQTGTGKTMAFLTATFHHLLSHPAPEGRKVNQPR 86 (423)
T ss_pred CCCCHHHHHHH-HHCCCCCCCHHHHHHHHHHHCC------CCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCE
T ss_conf 79699999999-9779999999999999999679------9889989998749999999999999837453345567861
Q ss_pred EEEEEHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECHH-----HCCCCCCCCCCCEE
Q ss_conf 5886127999999998621101457865899624642256676877621347548641112-----01334554444178
Q gi|254780945|r 324 AVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILV 398 (700)
Q Consensus 324 ~alMaPTEILA~QH~~~~~~~~~~~~i~v~lLtg~~~~~er~~i~~~i~~G~~~iiIGTHA-----L~q~~v~F~~LgLv 398 (700)
T Consensus 87 aLIL~PTRELa~Qi~~~~~~l~~~~~l~~~~~~GG~~~~~q~~---~l~~~-~dIlV~TPgRL~d~~~~~~~~l~~i~~l 162 (423)
T PRK04837 87 ALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGEGYDKQLK---VLESG-VDILIGTTGRLIDYAKQNHINLGAIQVV 162 (423)
T ss_pred EEEEECCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHH---HHHCC-CCEEEECHHHHHHHHHHCCCCCCCCEEE
T ss_conf 8999388999999999999974325845999989988799999---87179-9989989189999986422123664289
Q ss_pred EECCCCC-----CCHHHHHHHHHCCCCC-C--CEEECHHHHHHHHHHHHHHCC-CHHHHCCCCCCC--CCCEEEEEECC-
Q ss_conf 8521013-----3568899874025677-6--101010132278999975201-011110235576--66207999702-
Q gi|254780945|r 399 IVDEQHR-----FGVQQRLKLTQKATAP-H--VLLMTATPIPRTLVLTSLGDI-DISKITEKPAGR--KPIKTVIIPIN- 466 (700)
Q Consensus 399 ViDEQHR-----FGV~QR~~L~~Kg~~p-h--~L~MtATPIPRTLal~~ygdl-dvS~i~e~P~gR--~~I~T~~~~~~- 466 (700)
T Consensus 163 VlDEAD~lld~gF~~~i~-~i~~~~p~~~~r~~~lfSATl~~~v~~l-a~~~l~~p~~i~v~~~~~~~~~i~~~~~~~~~ 240 (423)
T PRK04837 163 VLDEADRMFDLGFIKDIR-WLFRRMPPANQRLNMLFSATLSYRVREL-AFEHMNNPEYVEVEPEQKTGHRIKEELFYPSN 240 (423)
T ss_pred EEECHHHHHHCCCHHHHH-HHHHHCCCCHHEEEEEEECCCCHHHHHH-HHHHCCCCEEEEECCCCCCCCCEEEEEEEECH
T ss_conf 963446543026399999-9999689622108999703688899999-99977898799965776566542699999172
Q ss_pred --CHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHCCCEEE
Q ss_conf --002689999763103873899971201221112101466666668663710312014699899999999975598699
Q gi|254780945|r 467 --RIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKL 544 (700)
Q Consensus 467 --~~~~~~~~i~~~l~~g~q~y~VcPlIeese~~~~~~~~~~~~~l~~~~~~~v~~lHGkm~~~ek~~~m~~F~~g~~~i 544 (700)
T Consensus 241 ~~K~~~L~~ll~~~--~~~k~iIF~nt~--------~~~~~l~~~L~~-~g~~~~~lhg~~~q~~R~~~l~~F~~g~~~v 309 (423)
T PRK04837 241 EEKMRLLQTLIEEE--WPDRAIIFANTK--------HRCEEIWGHLAA-DGHRVGLLTGDVPQKKRLRILEQFTRGDLDI 309 (423)
T ss_pred HHHHHHHHHHHHHH--CCCCEEEECCHH--------HHHHHHHHHHHH-CCCCEEEECCCCCHHHHHHHHHHHHCCCCCE
T ss_conf 77999999999840--887468861628--------889999999976-5981787225457999999999997699989
Q ss_pred EEECHHHHCCCCCCCCCEEEEECHHHCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 9980034104688876589985852547468877301166789835999970888998799999999841
Q gi|254780945|r 545 LIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614 (700)
Q Consensus 545 LvaTtviEVGvdvpna~~mvI~~aerfGLsqLHQLRGRVGRg~~~s~c~l~~~~~~~~~~~~Rl~~l~~~ 614 (700)
T Consensus 310 LVaTDvaaRGLDi~~V~~VInyD~P~~~~~YiHR-iGRTgRaG~~G~aitf~~----~~~~~~l~~ie~~ 374 (423)
T PRK04837 310 LVATDVAARGLHIPDVTHVFNYDLPDDCEDYVHR-IGRTGRAGASGHSISFAC----EEYALNLPAIETY 374 (423)
T ss_pred EEEHHHHHCCCCCCCCCEEEEECCCCCHHHEECC-CCHHHCCCCCEEEEEEEC----HHHHHHHHHHHHH
T ss_conf 9870043277772679889996998974551004-654127899468999873----9999999999999