HHsearch alignment for GI: 254780945 and conserved domain: PRK05298
>PRK05298 excinuclease ABC subunit B; Provisional.
Probab=99.75 E-value=5.1e-15 Score=137.36 Aligned_cols=309 Identities=22% Similarity=0.354 Sum_probs=216.5
Q ss_pred HCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHH-HCCEEEEEHHHHHHHHHHHHHHHHCC
Q ss_conf 30246798899999999984100134307886214422369999997334443-05458861279999999986211014
Q gi|254780945|r 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-GGQAVIMAPIGILAQQHYEFIKKYTQ 346 (700)
Q Consensus 268 ~LPF~LT~~Q~~ai~eI~~Dl~~~~pM~RLLQGDVGSGKTiVA~~A~l~~~~~-G~Q~alMaPTEILA~QH~~~~~~~~~ 346 (700)
T Consensus 9 ~s~~~P~GDQP~AI~~L~~gi~~g~~~Q-~LlGvTGSGKTfT----mAnvI~~~~rPtLVlahNKTLAAQLy~Efk~fFP 83 (657)
T PRK05298 9 VSPYKPAGDQPQAIAELVEGIESGEKHQ-TLLGVTGSGKTFT----MANVIARVQRPTLVLAHNKTLAAQLYGEFKEFFP 83 (657)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCEE-EEECCCCCCHHHH----HHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHCC
T ss_conf 8889999987999999998997499636-9970367856689----9999998689759976658899999999997688
Q ss_pred CCCCEEEEEECC-------------CC------------HH---------------------------------------
Q ss_conf 578658996246-------------42------------25---------------------------------------
Q gi|254780945|r 347 NTQIIVEIITGN-------------MP------------QA--------------------------------------- 362 (700)
Q Consensus 347 ~~~i~v~lLtg~-------------~~------------~~--------------------------------------- 362 (700)
T Consensus 84 ~N--aVEYFVSYyDYYQPEAYip~tDtYIEKdssIN~eId~lR~sAT~SLl~RrDVIVVASVSCIYGLGsPe~Y~~~~l~ 161 (657)
T PRK05298 84 EN--AVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINEEIERLRLSATKSLLERRDVIVVASVSCIYGLGSPEEYLKMVLH 161 (657)
T ss_pred CC--CEEEEECCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHCCCCCCHHHHHHCEEE
T ss_conf 87--1799851445669711147888524236346699999999999988547986999736761689997999734377
Q ss_pred -------HHHHHHHHH----------------------------------------------------------------
Q ss_conf -------667687762----------------------------------------------------------------
Q gi|254780945|r 363 -------HRRKALERI---------------------------------------------------------------- 371 (700)
Q Consensus 363 -------er~~i~~~i---------------------------------------------------------------- 371 (700)
T Consensus 162 l~~G~~i~r~~ll~~LV~~qY~RnD~~~~RG~FRVrGDvVdI~Pa~~ed~aiRIeffgDeIE~I~~~Dpltg~~i~~~~~ 241 (657)
T PRK05298 162 LRVGQEIDRRELLRRLVELQYERNDIDFQRGTFRVRGDVIDIFPAEYEDRAIRIEFFGDEIERISEFDPLTGEVLGELDR 241 (657)
T ss_pred EECCCEECHHHHHHHHHHHCCCCCCCCCCCCEEEEECCEEEEECCCCCCEEEEEEEECCCEEEEEEECCCCCCCCCCCCE
T ss_conf 75897717999999999828776765116855577366478833777761699999578062899982778835243334
Q ss_pred ----------------------------------------------------------CCCCCEE-----------EEEC
Q ss_conf ----------------------------------------------------------1347548-----------6411
Q gi|254780945|r 372 ----------------------------------------------------------AHGQAHI-----------IIGT 382 (700)
Q Consensus 372 ----------------------------------------------------------~~G~~~i-----------iIGT 382 (700)
T Consensus 242 ~~IfPAshyVt~~e~l~~Ai~~I~~EL~eRl~~f~~~gKllEAqRL~qRT~yDlEMl~E~GyCsGIENYSRhl~gR~pGe 321 (657)
T PRK05298 242 VTIYPASHYVTPRERLERAIESIKEELEERLKELEKEGKLLEAQRLEQRTRYDLEMLRELGYCSGIENYSRHLSGRAPGE 321 (657)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCC
T ss_conf 99817867689979999999999999999999999767779888999998879999998287756012156506999887
Q ss_pred --HHHCCCCCCCCCCCEEEECCCCCCCHHHH-----------HHHHHCC-------------------CCCCCEEECHHH
Q ss_conf --12013345544441788521013356889-----------9874025-------------------677610101013
Q gi|254780945|r 383 --HALFQDSIQYYKLILVIVDEQHRFGVQQR-----------LKLTQKA-------------------TAPHVLLMTATP 430 (700)
Q Consensus 383 --HAL~q~~v~F~~LgLvViDEQHRFGV~QR-----------~~L~~Kg-------------------~~ph~L~MtATP 430 (700)
T Consensus 322 ~P~tLlD---Yfp~DfLl~iDESHv-tvPQi~gMy~GDrsRK~~LVe~GFRLPSAlDNRPL~feEFe~~~~q~iyVSATP 397 (657)
T PRK05298 322 PPPTLLD---YFPDDFLLFIDESHV-TVPQIGGMYNGDRSRKETLVEYGFRLPSALDNRPLKFEEFEAKVPQTIYVSATP 397 (657)
T ss_pred CCCHHHH---HCCCCEEEEECCCCC-CCHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCEEEEECCC
T ss_conf 8944887---577565999832112-408788786231577888987057787233489978899997448779995698
Q ss_pred HHHHHHHHHHHCCCHHHHCCCCCCCC-CCEEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHH
Q ss_conf 22789999752010111102355766-62079997020026899997631038738999712012211121014666666
Q gi|254780945|r 431 IPRTLVLTSLGDIDISKITEKPAGRK-PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS 509 (700)
Q Consensus 431 IPRTLal~~ygdldvS~i~e~P~gR~-~I~T~~~~~~~~~~~~~~i~~~l~~g~q~y~VcPlIeese~~~~~~~~~~~~~ 509 (700)
T Consensus 398 g~yEl~~s--~~vvEQi--IRPTGLlDP~ievrp~~~Qiddl~~ei~~~~~~~er~Lvt-t-------lTkkmaEdLt~y 465 (657)
T PRK05298 398 GDYELEKS--GQVVEQI--IRPTGLLDPEIEVRPTKGQVDDLLSEIRKRVAKGERVLVT-T-------LTKRMAEDLTDY 465 (657)
T ss_pred CHHHHHHC--CCEEEEE--ECCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCEEEEE-E-------CHHHHHHHHHHH
T ss_conf 58988736--6734577--7788787984599648787999999999996369769999-5-------459899999999
Q ss_pred HHHHCCCCEECCCCCCCHHHHHHHHHHHHCCCEEEEEECHHHHCCCCCCCCCEEEEECHHHCCH----HHHHHHHHCCCC
Q ss_conf 6866371031201469989999999997559869999800341046888765899858525474----688773011667
Q gi|254780945|r 510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL----AQLHQLRGRVGR 585 (700)
Q Consensus 510 l~~~~~~~v~~lHGkm~~~ek~~~m~~F~~g~~~iLvaTtviEVGvdvpna~~mvI~~aerfGL----sqLHQLRGRVGR 585 (700)
T Consensus 466 l~~~-~ik~~YlHs~i~t~eR~eIl~~LR~G~~DVlVGINLLREGLDlPEVSLVaILDADKeGFLRs~~SLiQtiGRAAR 544 (657)
T PRK05298 466 LKEL-GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 (657)
T ss_pred HHHC-CCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEECHHHCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHH
T ss_conf 9967-980799626661889999999985888758975002204578761357988706852210352059999878862
Q ss_pred CCCCEEEEEEECCCCCH
Q ss_conf 89835999970888998
Q gi|254780945|r 586 GEEISSCILLYHPPLSK 602 (700)
Q Consensus 586 g~~~s~c~l~~~~~~~~ 602 (700)
T Consensus 545 N-~~G~vIlYA-D~iT~ 559 (657)
T PRK05298 545 N-VNGKVILYA-DKITD 559 (657)
T ss_pred C-CCCEEEEEE-CCCCH
T ss_conf 5-797499981-54509