HHsearch alignment for GI: 254780945 and conserved domain: PRK05298

>PRK05298 excinuclease ABC subunit B; Provisional.
Probab=99.75  E-value=5.1e-15  Score=137.36  Aligned_cols=309  Identities=22%  Similarity=0.354  Sum_probs=216.5

Q ss_pred             HCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHH-HCCEEEEEHHHHHHHHHHHHHHHHCC
Q ss_conf             30246798899999999984100134307886214422369999997334443-05458861279999999986211014
Q gi|254780945|r  268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-GGQAVIMAPIGILAQQHYEFIKKYTQ  346 (700)
Q Consensus       268 ~LPF~LT~~Q~~ai~eI~~Dl~~~~pM~RLLQGDVGSGKTiVA~~A~l~~~~~-G~Q~alMaPTEILA~QH~~~~~~~~~  346 (700)
T Consensus         9 ~s~~~P~GDQP~AI~~L~~gi~~g~~~Q-~LlGvTGSGKTfT----mAnvI~~~~rPtLVlahNKTLAAQLy~Efk~fFP   83 (657)
T PRK05298          9 VSPYKPAGDQPQAIAELVEGIESGEKHQ-TLLGVTGSGKTFT----MANVIARVQRPTLVLAHNKTLAAQLYGEFKEFFP   83 (657)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHCCCCEE-EEECCCCCCHHHH----HHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHCC
T ss_conf             8889999987999999998997499636-9970367856689----9999998689759976658899999999997688


Q ss_pred             CCCCEEEEEECC-------------CC------------HH---------------------------------------
Q ss_conf             578658996246-------------42------------25---------------------------------------
Q gi|254780945|r  347 NTQIIVEIITGN-------------MP------------QA---------------------------------------  362 (700)
Q Consensus       347 ~~~i~v~lLtg~-------------~~------------~~---------------------------------------  362 (700)
T Consensus        84 ~N--aVEYFVSYyDYYQPEAYip~tDtYIEKdssIN~eId~lR~sAT~SLl~RrDVIVVASVSCIYGLGsPe~Y~~~~l~  161 (657)
T PRK05298         84 EN--AVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINEEIERLRLSATKSLLERRDVIVVASVSCIYGLGSPEEYLKMVLH  161 (657)
T ss_pred             CC--CEEEEECCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHCCCCCCHHHHHHCEEE
T ss_conf             87--1799851445669711147888524236346699999999999988547986999736761689997999734377


Q ss_pred             -------HHHHHHHHH----------------------------------------------------------------
Q ss_conf             -------667687762----------------------------------------------------------------
Q gi|254780945|r  363 -------HRRKALERI----------------------------------------------------------------  371 (700)
Q Consensus       363 -------er~~i~~~i----------------------------------------------------------------  371 (700)
T Consensus       162 l~~G~~i~r~~ll~~LV~~qY~RnD~~~~RG~FRVrGDvVdI~Pa~~ed~aiRIeffgDeIE~I~~~Dpltg~~i~~~~~  241 (657)
T PRK05298        162 LRVGQEIDRRELLRRLVELQYERNDIDFQRGTFRVRGDVIDIFPAEYEDRAIRIEFFGDEIERISEFDPLTGEVLGELDR  241 (657)
T ss_pred             EECCCEECHHHHHHHHHHHCCCCCCCCCCCCEEEEECCEEEEECCCCCCEEEEEEEECCCEEEEEEECCCCCCCCCCCCE
T ss_conf             75897717999999999828776765116855577366478833777761699999578062899982778835243334


Q ss_pred             ----------------------------------------------------------CCCCCEE-----------EEEC
Q ss_conf             ----------------------------------------------------------1347548-----------6411
Q gi|254780945|r  372 ----------------------------------------------------------AHGQAHI-----------IIGT  382 (700)
Q Consensus       372 ----------------------------------------------------------~~G~~~i-----------iIGT  382 (700)
T Consensus       242 ~~IfPAshyVt~~e~l~~Ai~~I~~EL~eRl~~f~~~gKllEAqRL~qRT~yDlEMl~E~GyCsGIENYSRhl~gR~pGe  321 (657)
T PRK05298        242 VTIYPASHYVTPRERLERAIESIKEELEERLKELEKEGKLLEAQRLEQRTRYDLEMLRELGYCSGIENYSRHLSGRAPGE  321 (657)
T ss_pred             EEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCC
T ss_conf             99817867689979999999999999999999999767779888999998879999998287756012156506999887


Q ss_pred             --HHHCCCCCCCCCCCEEEECCCCCCCHHHH-----------HHHHHCC-------------------CCCCCEEECHHH
Q ss_conf             --12013345544441788521013356889-----------9874025-------------------677610101013
Q gi|254780945|r  383 --HALFQDSIQYYKLILVIVDEQHRFGVQQR-----------LKLTQKA-------------------TAPHVLLMTATP  430 (700)
Q Consensus       383 --HAL~q~~v~F~~LgLvViDEQHRFGV~QR-----------~~L~~Kg-------------------~~ph~L~MtATP  430 (700)
T Consensus       322 ~P~tLlD---Yfp~DfLl~iDESHv-tvPQi~gMy~GDrsRK~~LVe~GFRLPSAlDNRPL~feEFe~~~~q~iyVSATP  397 (657)
T PRK05298        322 PPPTLLD---YFPDDFLLFIDESHV-TVPQIGGMYNGDRSRKETLVEYGFRLPSALDNRPLKFEEFEAKVPQTIYVSATP  397 (657)
T ss_pred             CCCHHHH---HCCCCEEEEECCCCC-CCHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCEEEEECCC
T ss_conf             8944887---577565999832112-408788786231577888987057787233489978899997448779995698


Q ss_pred             HHHHHHHHHHHCCCHHHHCCCCCCCC-CCEEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHH
Q ss_conf             22789999752010111102355766-62079997020026899997631038738999712012211121014666666
Q gi|254780945|r  431 IPRTLVLTSLGDIDISKITEKPAGRK-PIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNS  509 (700)
Q Consensus       431 IPRTLal~~ygdldvS~i~e~P~gR~-~I~T~~~~~~~~~~~~~~i~~~l~~g~q~y~VcPlIeese~~~~~~~~~~~~~  509 (700)
T Consensus       398 g~yEl~~s--~~vvEQi--IRPTGLlDP~ievrp~~~Qiddl~~ei~~~~~~~er~Lvt-t-------lTkkmaEdLt~y  465 (657)
T PRK05298        398 GDYELEKS--GQVVEQI--IRPTGLLDPEIEVRPTKGQVDDLLSEIRKRVAKGERVLVT-T-------LTKRMAEDLTDY  465 (657)
T ss_pred             CHHHHHHC--CCEEEEE--ECCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCEEEEE-E-------CHHHHHHHHHHH
T ss_conf             58988736--6734577--7788787984599648787999999999996369769999-5-------459899999999


Q ss_pred             HHHHCCCCEECCCCCCCHHHHHHHHHHHHCCCEEEEEECHHHHCCCCCCCCCEEEEECHHHCCH----HHHHHHHHCCCC
Q ss_conf             6866371031201469989999999997559869999800341046888765899858525474----688773011667
Q gi|254780945|r  510 LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGL----AQLHQLRGRVGR  585 (700)
Q Consensus       510 l~~~~~~~v~~lHGkm~~~ek~~~m~~F~~g~~~iLvaTtviEVGvdvpna~~mvI~~aerfGL----sqLHQLRGRVGR  585 (700)
T Consensus       466 l~~~-~ik~~YlHs~i~t~eR~eIl~~LR~G~~DVlVGINLLREGLDlPEVSLVaILDADKeGFLRs~~SLiQtiGRAAR  544 (657)
T PRK05298        466 LKEL-GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR  544 (657)
T ss_pred             HHHC-CCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEECHHHCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHH
T ss_conf             9967-980799626661889999999985888758975002204578761357988706852210352059999878862


Q ss_pred             CCCCEEEEEEECCCCCH
Q ss_conf             89835999970888998
Q gi|254780945|r  586 GEEISSCILLYHPPLSK  602 (700)
Q Consensus       586 g~~~s~c~l~~~~~~~~  602 (700)
T Consensus       545 N-~~G~vIlYA-D~iT~  559 (657)
T PRK05298        545 N-VNGKVILYA-DKITD  559 (657)
T ss_pred             C-CCCEEEEEE-CCCCH
T ss_conf             5-797499981-54509