HHsearch alignment for GI: 254780945 and conserved domain: PRK05580

>PRK05580 primosome assembly protein PriA; Validated.
Probab=100.00  E-value=1.5e-35  Score=298.36  Aligned_cols=376  Identities=24%  Similarity=0.337  Sum_probs=285.9

Q ss_pred             HCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCEEEEEHHHH-HHHHHHHHHHHHCC
Q ss_conf             30246798899999999984100134307886214422369999997334443054588612799-99999986211014
Q gi|254780945|r  268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI-LAQQHYEFIKKYTQ  346 (700)
Q Consensus       268 ~LPF~LT~~Q~~ai~eI~~Dl~~~~pM~RLLQGDVGSGKTiVA~~A~l~~~~~G~Q~alMaPTEI-LA~QH~~~~~~~~~  346 (700)
T Consensus       164 ~~~~~L~~eQ~~a~~~i~~~-~~~~--~~LL~GvTGSGKTevYl~li~~~l~~GkqvLiLvP-EI~lt~q~~~rl~~~fg  239 (699)
T PRK05580        164 TEPPTLNEEQAAALAAIRAA-GGFS--AFLLDGVTGSGKTEVYLQAIAEALAQGKQALVLVP-EIALTPQLLARFRARFG  239 (699)
T ss_pred             CCCCCCCHHHHHHHHHHHHC-CCCC--CEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEC-CHHHHHHHHHHHHHHHC
T ss_conf             67878899999999999855-8887--17874789860799999999999973997899917-67878999999998709


Q ss_pred             CCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEEC-HHHCCCCCCCCCCCEEEECCCC----------CCCHHHHHHHH
Q ss_conf             578658996246422566768776213475486411-1201334554444178852101----------33568899874
Q gi|254780945|r  347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT-HALFQDSIQYYKLILVIVDEQH----------RFGVQQRLKLT  415 (700)
Q Consensus       347 ~~~i~v~lLtg~~~~~er~~i~~~i~~G~~~iiIGT-HAL~q~~v~F~~LgLvViDEQH----------RFGV~QR~~L~  415 (700)
T Consensus       240 ---~~v~v~HS~ls~~eR~~~w~~i~~G~~~IVIGtRSAvF---aP~~nLgLIIVDEEhd~SYKq~~~Pry~ARdvA~~R  313 (699)
T PRK05580        240 ---ARVAVLHSGLSDGERYRAWLAALRGEARVVIGTRSALF---APFKNLGLIIVDEEHDDSYKQQDGPRYHARDVAVLR  313 (699)
T ss_pred             ---CCEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCEEE---CCCCCCCEEEEECCCCHHHCCCCCCCCCHHHHHHHH
T ss_conf             ---95799648898579999999997699719997360110---657898489997365454446668761199999999


Q ss_pred             HCCCCCCCEEECHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCEEEEEECCC--------H-HHHHHHHHHHHCCCCEEE
Q ss_conf             0256776101010132278999975201011110235576662079997020--------0-268999976310387389
Q gi|254780945|r  416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--------I-DEVIERLKVVLSEGKKAY  486 (700)
Q Consensus       416 ~Kg~~ph~L~MtATPIPRTLal~~ygdldvS~i~e~P~gR~~I~T~~~~~~~--------~-~~~~~~i~~~l~~g~q~y  486 (700)
T Consensus       314 a~~~~~~liLgSaTPSlEs~~~~~~g~~~~~~l~~r~~~~~~P~v~ivDm~~~~~~~~~~ls~~l~~~i~~~L~~g~qvl  393 (699)
T PRK05580        314 AKQEGCPVVLGSATPSLESLANAESGKYHLLRLTRRAGAAALPRVEIIDMREEPLERGAGLSPPLLEAIREALERGEQVL  393 (699)
T ss_pred             HHHHCCCEEECCCCCCHHHHHHHHCCCCEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEE
T ss_conf             99849988961689999999999759976644653223478983793354214100257546999999999997388479


Q ss_pred             EEECCCC-------------------------C-------------------------CCCCC--CCHHHHHHHHHHHHC
Q ss_conf             9971201-------------------------2-------------------------21112--101466666668663
Q gi|254780945|r  487 WICPQIE-------------------------E-------------------------KKESN--FRSVVERFNSLHEHF  514 (700)
Q Consensus       487 ~VcPlIe-------------------------e-------------------------se~~~--~~~~~~~~~~l~~~~  514 (700)
T Consensus       394 l~lnRrGya~~~~C~~Cg~~~~C~~C~~~L~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cgs~~l~~~g~Gteri~eel~~~F  473 (699)
T PRK05580        394 LFLNRRGYAPFLLCRDCGWVARCPHCDGPLTLHRAGRRLRCHHCGYQEPIPRACPECGSTDLRAVGVGTERTEEELARLF  473 (699)
T ss_pred             EEECCCCCCCEEECHHCCCEEECCCCCCEEEECCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf             99547752251474531994565678986342068983322646883657554656799752411168599999999778


Q ss_pred             CC-CEECCCCCC--CHHHHHHHHHHHHCCCEEEEEECHHHHCCCCCCCCCEEEEECHHHC-----------CHHHHHHHH
Q ss_conf             71-031201469--9899999999975598699998003410468887658998585254-----------746887730
Q gi|254780945|r  515 TS-SIAIIHGRM--SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF-----------GLAQLHQLR  580 (700)
Q Consensus       515 ~~-~v~~lHGkm--~~~ek~~~m~~F~~g~~~iLvaTtviEVGvdvpna~~mvI~~aerf-----------GLsqLHQLR  580 (700)
T Consensus       474 P~~~i~r~d~d~~~~~~~~~~~~~~~~~~~~dIlvGTqmiakG~df~~v~lv~vldaD~~l~~pd~ra~E~~~qll~qva  553 (699)
T PRK05580        474 PGARVLRIDRDTTRRKGALEQLLEDFARGEADILVGTQMLAKGHDFPNVTLVGVLDADTGLFSPDFRAAERTFQLLTQVA  553 (699)
T ss_pred             CCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCEEEEEEECHHHHCCCCCCCHHHHHHHHHHHHH
T ss_conf             99988998475567863168899997468987897773345567777626998732265354888347999999999998


Q ss_pred             HCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCHHCCCCCCC-CCCHHHHHHHHHHH
Q ss_conf             11667898359999708889987999999998414258999999852063000260006987440-00388759999999
Q gi|254780945|r  581 GRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIA  659 (700)
Q Consensus       581 GRVGRg~~~s~c~l~~~~~~~~~~~~Rl~~l~~~~dGf~iAe~Dl~lRG~G~~~G~~QsG~~~~~-~~d~~~d~~ll~~a  659 (700)
T Consensus       554 gragr~~~~g~viiQt~~p~~~~----~~~l~~-~d~~~f~~~el~~R--------~~~~~PPf~~l~~i~~~~~~~~~~  620 (699)
T PRK05580        554 GRAGRAEKPGEVLIQTYEPEHPL----LQALLR-WDYDAFAEAELAER--------REAGLPPFVRLALVRGSAKAVAKA  620 (699)
T ss_pred             HHHCCCCCCCEEEEEECCCCCHH----HHHHHH-CCHHHHHHHHHHHH--------HHCCCCCHHHHHEEEEECCCHHHH
T ss_conf             76556788987999937999899----999996-89999999999999--------970999868751789953999999


Q ss_pred             HHHHHHH
Q ss_conf             9999999
Q gi|254780945|r  660 RKDAKHI  666 (700)
Q Consensus       660 ~~~a~~~  666 (700)
T Consensus       621 ~~~~~~~  627 (699)
T PRK05580        621 LKFAQQL  627 (699)
T ss_pred             HHHHHHH
T ss_conf             9999999