HHsearch alignment for GI: 254780945 and conserved domain: PRK05580
>PRK05580 primosome assembly protein PriA; Validated.
Probab=100.00 E-value=1.5e-35 Score=298.36 Aligned_cols=376 Identities=24% Similarity=0.337 Sum_probs=285.9
Q ss_pred HCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCEEEEEHHHH-HHHHHHHHHHHHCC
Q ss_conf 30246798899999999984100134307886214422369999997334443054588612799-99999986211014
Q gi|254780945|r 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGI-LAQQHYEFIKKYTQ 346 (700)
Q Consensus 268 ~LPF~LT~~Q~~ai~eI~~Dl~~~~pM~RLLQGDVGSGKTiVA~~A~l~~~~~G~Q~alMaPTEI-LA~QH~~~~~~~~~ 346 (700)
T Consensus 164 ~~~~~L~~eQ~~a~~~i~~~-~~~~--~~LL~GvTGSGKTevYl~li~~~l~~GkqvLiLvP-EI~lt~q~~~rl~~~fg 239 (699)
T PRK05580 164 TEPPTLNEEQAAALAAIRAA-GGFS--AFLLDGVTGSGKTEVYLQAIAEALAQGKQALVLVP-EIALTPQLLARFRARFG 239 (699)
T ss_pred CCCCCCCHHHHHHHHHHHHC-CCCC--CEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEC-CHHHHHHHHHHHHHHHC
T ss_conf 67878899999999999855-8887--17874789860799999999999973997899917-67878999999998709
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEEC-HHHCCCCCCCCCCCEEEECCCC----------CCCHHHHHHHH
Q ss_conf 578658996246422566768776213475486411-1201334554444178852101----------33568899874
Q gi|254780945|r 347 NTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT-HALFQDSIQYYKLILVIVDEQH----------RFGVQQRLKLT 415 (700)
Q Consensus 347 ~~~i~v~lLtg~~~~~er~~i~~~i~~G~~~iiIGT-HAL~q~~v~F~~LgLvViDEQH----------RFGV~QR~~L~ 415 (700)
T Consensus 240 ---~~v~v~HS~ls~~eR~~~w~~i~~G~~~IVIGtRSAvF---aP~~nLgLIIVDEEhd~SYKq~~~Pry~ARdvA~~R 313 (699)
T PRK05580 240 ---ARVAVLHSGLSDGERYRAWLAALRGEARVVIGTRSALF---APFKNLGLIIVDEEHDDSYKQQDGPRYHARDVAVLR 313 (699)
T ss_pred ---CCEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCEEE---CCCCCCCEEEEECCCCHHHCCCCCCCCCHHHHHHHH
T ss_conf ---95799648898579999999997699719997360110---657898489997365454446668761199999999
Q ss_pred HCCCCCCCEEECHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCEEEEEECCC--------H-HHHHHHHHHHHCCCCEEE
Q ss_conf 0256776101010132278999975201011110235576662079997020--------0-268999976310387389
Q gi|254780945|r 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINR--------I-DEVIERLKVVLSEGKKAY 486 (700)
Q Consensus 416 ~Kg~~ph~L~MtATPIPRTLal~~ygdldvS~i~e~P~gR~~I~T~~~~~~~--------~-~~~~~~i~~~l~~g~q~y 486 (700)
T Consensus 314 a~~~~~~liLgSaTPSlEs~~~~~~g~~~~~~l~~r~~~~~~P~v~ivDm~~~~~~~~~~ls~~l~~~i~~~L~~g~qvl 393 (699)
T PRK05580 314 AKQEGCPVVLGSATPSLESLANAESGKYHLLRLTRRAGAAALPRVEIIDMREEPLERGAGLSPPLLEAIREALERGEQVL 393 (699)
T ss_pred HHHHCCCEEECCCCCCHHHHHHHHCCCCEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEE
T ss_conf 99849988961689999999999759976644653223478983793354214100257546999999999997388479
Q ss_pred EEECCCC-------------------------C-------------------------CCCCC--CCHHHHHHHHHHHHC
Q ss_conf 9971201-------------------------2-------------------------21112--101466666668663
Q gi|254780945|r 487 WICPQIE-------------------------E-------------------------KKESN--FRSVVERFNSLHEHF 514 (700)
Q Consensus 487 ~VcPlIe-------------------------e-------------------------se~~~--~~~~~~~~~~l~~~~ 514 (700)
T Consensus 394 l~lnRrGya~~~~C~~Cg~~~~C~~C~~~L~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cgs~~l~~~g~Gteri~eel~~~F 473 (699)
T PRK05580 394 LFLNRRGYAPFLLCRDCGWVARCPHCDGPLTLHRAGRRLRCHHCGYQEPIPRACPECGSTDLRAVGVGTERTEEELARLF 473 (699)
T ss_pred EEECCCCCCCEEECHHCCCEEECCCCCCEEEECCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf 99547752251474531994565678986342068983322646883657554656799752411168599999999778
Q ss_pred CC-CEECCCCCC--CHHHHHHHHHHHHCCCEEEEEECHHHHCCCCCCCCCEEEEECHHHC-----------CHHHHHHHH
Q ss_conf 71-031201469--9899999999975598699998003410468887658998585254-----------746887730
Q gi|254780945|r 515 TS-SIAIIHGRM--SDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHF-----------GLAQLHQLR 580 (700)
Q Consensus 515 ~~-~v~~lHGkm--~~~ek~~~m~~F~~g~~~iLvaTtviEVGvdvpna~~mvI~~aerf-----------GLsqLHQLR 580 (700)
T Consensus 474 P~~~i~r~d~d~~~~~~~~~~~~~~~~~~~~dIlvGTqmiakG~df~~v~lv~vldaD~~l~~pd~ra~E~~~qll~qva 553 (699)
T PRK05580 474 PGARVLRIDRDTTRRKGALEQLLEDFARGEADILVGTQMLAKGHDFPNVTLVGVLDADTGLFSPDFRAAERTFQLLTQVA 553 (699)
T ss_pred CCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCEEEEEEECHHHHCCCCCCCHHHHHHHHHHHHH
T ss_conf 99988998475567863168899997468987897773345567777626998732265354888347999999999998
Q ss_pred HCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCHHCCCCCCC-CCCHHHHHHHHHHH
Q ss_conf 11667898359999708889987999999998414258999999852063000260006987440-00388759999999
Q gi|254780945|r 581 GRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFL-IAQPELHDSLLEIA 659 (700)
Q Consensus 581 GRVGRg~~~s~c~l~~~~~~~~~~~~Rl~~l~~~~dGf~iAe~Dl~lRG~G~~~G~~QsG~~~~~-~~d~~~d~~ll~~a 659 (700)
T Consensus 554 gragr~~~~g~viiQt~~p~~~~----~~~l~~-~d~~~f~~~el~~R--------~~~~~PPf~~l~~i~~~~~~~~~~ 620 (699)
T PRK05580 554 GRAGRAEKPGEVLIQTYEPEHPL----LQALLR-WDYDAFAEAELAER--------REAGLPPFVRLALVRGSAKAVAKA 620 (699)
T ss_pred HHHCCCCCCCEEEEEECCCCCHH----HHHHHH-CCHHHHHHHHHHHH--------HHCCCCCHHHHHEEEEECCCHHHH
T ss_conf 76556788987999937999899----999996-89999999999999--------970999868751789953999999
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q gi|254780945|r 660 RKDAKHI 666 (700)
Q Consensus 660 ~~~a~~~ 666 (700)
T Consensus 621 ~~~~~~~ 627 (699)
T PRK05580 621 LKFAQQL 627 (699)
T ss_pred HHHHHHH
T ss_conf 9999999