HHsearch alignment for GI: 254780945 and conserved domain: PRK07211
>PRK07211 replication factor A; Reviewed.
Probab=96.13 E-value=0.059 Score=34.89 Aligned_cols=107 Identities=12% Similarity=0.178 Sum_probs=74.4
Q ss_pred CCCHHHCCCCC-EEEEEEEEEEEEEEC-CCC-----CCEEEEEEECCCCEEEEEEECCCHHHHHHHCCCCCEEEE-EEEE
Q ss_conf 46478889987-899999998975421-589-----833899998189369999951887899873289888999-9899
Q gi|254780945|r 58 RPKISEISEER-IVTITGYISQHSSFQ-LQK-----RRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITV-TGKI 129 (700)
Q Consensus 58 ~~~I~~l~~g~-~vti~g~V~~~~~~~-~~~-----r~~~~v~v~D~tg~i~lvfFn~~~~yl~k~lk~G~~v~v-sGKv 129 (700)
T Consensus 162 ~~~I~~l~~g~~dv~l~g~VL~~~~iRtF~R~DGSeGrV~sl~lGDETG~IRvTLWDd~aDl~-~~l~~GdsVeIv~ayv 240 (473)
T PRK07211 162 EYDADDLSLGQSDVTLRGEVLDTDAVRTFDRDDGSEGRVSNLTVGDETGRIRVTLWDDQADRA-DDLDAGASVEIVDGYV 240 (473)
T ss_pred CCCCCCCCCCCCCCEEEEEEECCCCCCCEECCCCCCCEEEEEEEECCCCEEEEEEECCCCCCC-CCCCCCCEEEEECCEE
T ss_conf 641122667887637999994378874114578986348888985587619999855874100-2589998799932586
Q ss_pred EECCCEEEEECCEE---EECCCCCCCCCCCCCCCCCCHH
Q ss_conf 73187799977868---9626433444441100000000
Q gi|254780945|r 130 KKLKNRIIMVHPHY---IFHNSQDVNFPLIEAVYSLPTG 165 (700)
Q Consensus 130 ~~~~~~~qi~hPe~---~~~~~~~~~~~~I~PIYplt~G 165 (700)
T Consensus 241 REr~g~lEL~vgd~g~I~k~d~~Vey~peftpI~dI~~~ 279 (473)
T PRK07211 241 REREGSLELHVGDRGAVDEVDEDVEFVPDTTPIDSVEID 279 (473)
T ss_pred ECCCCCEEEEECCCCEEEECCCCCCCCCCCCCHHHCCCC
T ss_conf 224785678974631377556540025576527561358