HHsearch alignment for GI: 254780945 and conserved domain: PRK07246

>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated.
Probab=98.42  E-value=0.00044  Score=51.60  Aligned_cols=137  Identities=17%  Similarity=0.268  Sum_probs=95.0

Q ss_pred             HCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHH-HHHHCC
Q ss_conf             3024679889999999998410013430788621442236999999733444305458861279999999986-211014
Q gi|254780945|r  268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF-IKKYTQ  346 (700)
Q Consensus       268 ~LPF~LT~~Q~~ai~eI~~Dl~~~~pM~RLLQGDVGSGKTiVA~~A~l~~~~~G~Q~alMaPTEILA~QH~~~-~~~~~~  346 (700)
T Consensus       241 ~~g~E~R~~Q~~Ma~~V~~al~~~~~l--~IEAgTGtGKTlaYLlPai-a~~~~~~vVIST~T~~LQeQL~~kDlp~L~~  317 (820)
T PRK07246        241 LLGLEERPKQEQFAQLVDEDYHDGVAS--FIEAQTGIGKTYGYLLPLL-AQSDQNQIIVSVPTKLLQDQIMAGEVKAIQE  317 (820)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCCE--EEECCCCCCHHHHHHHHHH-HHCCCCEEEEEECCHHHHHHHHHHHHHHHHH
T ss_conf             679861889999999999998058838--9988999647999999999-8437983999908699999999978999999


Q ss_pred             CCCCEEEEEECCCC-----------------------------------HHHHH---------HHHHHH-----------
Q ss_conf             57865899624642-----------------------------------25667---------687762-----------
Q gi|254780945|r  347 NTQIIVEIITGNMP-----------------------------------QAHRR---------KALERI-----------  371 (700)
Q Consensus       347 ~~~i~v~lLtg~~~-----------------------------------~~er~---------~i~~~i-----------  371 (700)
T Consensus       318 ~l~~~~~~lKGr~nYLcL~~~~~~l~~~d~~~~~~~~~~~ll~Wl~~T~tGD~dEL~~~~~~~~~~~~i~~~~~l~~~~~  397 (820)
T PRK07246        318 QFHIACHSLKGPQNYLKLDSFYDSLQQNDQNRLVNRYKMQLLVWLLETETGDLDEIKQKQRYAAYFDQLKHDGDLKQSSL  397 (820)
T ss_pred             HHCCCCCEEECHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHCCCCCCCCCCCC
T ss_conf             84875033656786164888999860453023545899999999726898897772354103578775065577887898


Q ss_pred             ------------CCCCCEEEEECHHHCCCCC----CCCCCCEEEECCCCCCC
Q ss_conf             ------------1347548641112013345----54444178852101335
Q gi|254780945|r  372 ------------AHGQAHIIIGTHALFQDSI----QYYKLILVIVDEQHRFG  407 (700)
Q Consensus       372 ------------~~G~~~iiIGTHAL~q~~v----~F~~LgLvViDEQHRFG  407 (700)
T Consensus       398 ~~~~cf~~~ar~~a~~AdivI~NHalLl~~~~~~~~~~~~~~lIiDEAH~L~  449 (820)
T PRK07246        398 FYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDKDFVRNKVLVFDEAQKLM  449 (820)
T ss_pred             CCCCHHHHHHHHHHHHCCEEEECHHHHHHHHHHCCCCCCCCEEEEECCCHHH
T ss_conf             7640599999999861658984679999987414457768879998814279