HHsearch alignment for GI: 254780945 and conserved domain: PRK07246
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated.
Probab=98.42 E-value=0.00044 Score=51.60 Aligned_cols=137 Identities=17% Similarity=0.268 Sum_probs=95.0
Q ss_pred HCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHH-HHHHCC
Q ss_conf 3024679889999999998410013430788621442236999999733444305458861279999999986-211014
Q gi|254780945|r 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF-IKKYTQ 346 (700)
Q Consensus 268 ~LPF~LT~~Q~~ai~eI~~Dl~~~~pM~RLLQGDVGSGKTiVA~~A~l~~~~~G~Q~alMaPTEILA~QH~~~-~~~~~~ 346 (700)
T Consensus 241 ~~g~E~R~~Q~~Ma~~V~~al~~~~~l--~IEAgTGtGKTlaYLlPai-a~~~~~~vVIST~T~~LQeQL~~kDlp~L~~ 317 (820)
T PRK07246 241 LLGLEERPKQEQFAQLVDEDYHDGVAS--FIEAQTGIGKTYGYLLPLL-AQSDQNQIIVSVPTKLLQDQIMAGEVKAIQE 317 (820)
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCE--EEECCCCCCHHHHHHHHHH-HHCCCCEEEEEECCHHHHHHHHHHHHHHHHH
T ss_conf 679861889999999999998058838--9988999647999999999-8437983999908699999999978999999
Q ss_pred CCCCEEEEEECCCC-----------------------------------HHHHH---------HHHHHH-----------
Q ss_conf 57865899624642-----------------------------------25667---------687762-----------
Q gi|254780945|r 347 NTQIIVEIITGNMP-----------------------------------QAHRR---------KALERI----------- 371 (700)
Q Consensus 347 ~~~i~v~lLtg~~~-----------------------------------~~er~---------~i~~~i----------- 371 (700)
T Consensus 318 ~l~~~~~~lKGr~nYLcL~~~~~~l~~~d~~~~~~~~~~~ll~Wl~~T~tGD~dEL~~~~~~~~~~~~i~~~~~l~~~~~ 397 (820)
T PRK07246 318 QFHIACHSLKGPQNYLKLDSFYDSLQQNDQNRLVNRYKMQLLVWLLETETGDLDEIKQKQRYAAYFDQLKHDGDLKQSSL 397 (820)
T ss_pred HHCCCCCEEECHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHCCCCCCCCCCCC
T ss_conf 84875033656786164888999860453023545899999999726898897772354103578775065577887898
Q ss_pred ------------CCCCCEEEEECHHHCCCCC----CCCCCCEEEECCCCCCC
Q ss_conf ------------1347548641112013345----54444178852101335
Q gi|254780945|r 372 ------------AHGQAHIIIGTHALFQDSI----QYYKLILVIVDEQHRFG 407 (700)
Q Consensus 372 ------------~~G~~~iiIGTHAL~q~~v----~F~~LgLvViDEQHRFG 407 (700)
T Consensus 398 ~~~~cf~~~ar~~a~~AdivI~NHalLl~~~~~~~~~~~~~~lIiDEAH~L~ 449 (820)
T PRK07246 398 FYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDKDFVRNKVLVFDEAQKLM 449 (820)
T ss_pred CCCCHHHHHHHHHHHHCCEEEECHHHHHHHHHHCCCCCCCCEEEEECCCHHH
T ss_conf 7640599999999861658984679999987414457768879998814279