HHsearch alignment for GI: 254780945 and conserved domain: PRK07373
>PRK07373 DNA polymerase III subunit alpha; Reviewed.
Probab=97.65 E-value=0.001 Score=48.78 Aligned_cols=93 Identities=15% Similarity=0.266 Sum_probs=44.4
Q ss_pred EEECHHHHHHHH-HHHHHHCCCHHHHCCCCCCCCCCEEEEEECCCHHHHHHHHHHHH-CCCCEEEEEECCCCCCCCCCCC
Q ss_conf 010101322789-99975201011110235576662079997020026899997631-0387389997120122111210
Q gi|254780945|r 424 LLMTATPIPRTL-VLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL-SEGKKAYWICPQIEEKKESNFR 501 (700)
Q Consensus 424 L~MtATPIPRTL-al~~ygdldvS~i~e~P~gR~~I~T~~~~~~~~~~~~~~i~~~l-~~g~q~y~VcPlIeese~~~~~ 501 (700)
T Consensus 247 fYlSgHPL~~y~~~~~~~~~~~~~~l~~~~~~-~~V~~~g~I~~--------vr~~~TKkG-~~MAfvtLeD~tG~iEvv 316 (447)
T PRK07373 247 FYVSEHPLKSLQRPAPLLSPINLSQLEEQKER-TKVSAVVMLNG--------VKKIVTKKG-DPMAFLQLEDLSGQSEAV 316 (447)
T ss_pred EEECCCHHHHHHHHHHHHCCCCHHHHHHCCCC-CEEEEEEEEEE--------EEEEECCCC-CEEEEEEEEECCCCEEEE
T ss_conf 68620737899999888387138996402489-78999999999--------999870489-659999999789748999
Q ss_pred HHHHHHHHHHHHCC-CCEECCCCCCC
Q ss_conf 14666666686637-10312014699
Q gi|254780945|r 502 SVVERFNSLHEHFT-SSIAIIHGRMS 526 (700)
Q Consensus 502 ~~~~~~~~l~~~~~-~~v~~lHGkm~ 526 (700)
T Consensus 317 vFpe~ye~~~~~L~~d~ivlv~Gkv~ 342 (447)
T PRK07373 317 VFPKSYERIQELLQEDSRLIIWGKVD 342 (447)
T ss_pred EEHHHHHHHHHHHCCCCEEEEEEEEE
T ss_conf 80899999988733799899999999