HHsearch alignment for GI: 254780945 and conserved domain: PRK07374
>PRK07374 dnaE DNA polymerase III subunit alpha; Validated.
Probab=97.57 E-value=0.0014 Score=47.56 Aligned_cols=81 Identities=19% Similarity=0.220 Sum_probs=57.2
Q ss_pred HHHHHHCCCC--EECCCCCCCHHHH-HHHHHHHHCCCEEEEEECHHHHCCCCCCCCCEEEEECHHHCCHHHHHHHH----
Q ss_conf 6668663710--3120146998999-99999975598699998003410468887658998585254746887730----
Q gi|254780945|r 508 NSLHEHFTSS--IAIIHGRMSDIDK-ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLR---- 580 (700)
Q Consensus 508 ~~l~~~~~~~--v~~lHGkm~~~ek-~~~m~~F~~g~~~iLvaTtviEVGvdvpna~~mvI~~aerfGLsqLHQLR---- 580 (700)
T Consensus 775 AyLK~hyP~eF~aalL~~~~~~~~k~~~~i~ea~~~gi~v------lpPdIN~S~~~f~~~~~~I~~gl~~Ikgvg~~~~ 848 (1171)
T PRK07374 775 AYLKAHYPVAYMAALLTVNAGSSDKVQRYISNCNSMGIEV------MPPDINASGIDFTPKGNRILFGLSAVKNLGDGAI 848 (1171)
T ss_pred HHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCE------ECCCEEEECCCEEECCCCEEHHHHHHCCCCHHHH
T ss_conf 9999778999999985058899747999999999879916------2883322178216759822146567437339999
Q ss_pred -----HCCCCCCCCEEEEE
Q ss_conf -----11667898359999
Q gi|254780945|r 581 -----GRVGRGEEISSCIL 594 (700)
Q Consensus 581 -----GRVGRg~~~s~c~l 594 (700)
T Consensus 849 ~~Iv~~R~~~Gpf~sl~Df 867 (1171)
T PRK07374 849 RNLIASRDSDGPFKSLADL 867 (1171)
T ss_pred HHHHHHHHHCCCCCCHHHH
T ss_conf 9999999858597989999