HHsearch alignment for GI: 254780945 and conserved domain: PRK08402
>PRK08402 replication factor A; Reviewed.
Probab=93.81 E-value=0.49 Score=27.74 Aligned_cols=108 Identities=19% Similarity=0.195 Sum_probs=68.6
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHCCCCC---EEEEEEEEEEEEEEC-CCC-----
Q ss_conf 67858899999887401246885548987870897401344446478889987---899999998975421-589-----
Q gi|254780945|r 16 FRGVGKKYSLFLSKIINCGNANETRFIDLLFYHPSSFIDRHYRPKISEISEER---IVTITGYISQHSSFQ-LQK----- 86 (700)
Q Consensus 16 LkGVGpk~a~~L~kl~~l~~~GI~ti~DLL~~~PrrYeDr~~~~~I~~l~~g~---~vti~g~V~~~~~~~-~~~----- 86 (700)
T Consensus 34 e~gISE~gAalllAe----eLGV~----L----~~~ee--e~~~kIkdI~~Gm~~rnVeivgrIi~ky~~REf~kkDGS~ 99 (357)
T PRK08402 34 EDGISEHAAALLLAE----RLGVD----L----IKKEE--QSLMKISDLYPGMDPREVNIVGRILKKYPPREYTKKDGST 99 (357)
T ss_pred HCCCCHHHHHHHHHH----HHCCC----C----CCCCC--CCCCCHHHHHCCCCCCCCEEEEEEEEECCCHHHHHCCCCC
T ss_conf 628776789999999----85886----5----55566--5640577750766756757999873305805530036987
Q ss_pred CCEEEEEEECCCCEEEEEEECCCH-HHHHHHCCCCCEEEE-EEEEEEC-CCEEEE
Q ss_conf 833899998189369999951887-899873289888999-9899731-877999
Q gi|254780945|r 87 RRPYKILLNDGTGEITLLFFYRKT-EMLKNVFFEGRKITV-TGKIKKL-KNRIIM 138 (700)
Q Consensus 87 r~~~~v~v~D~tg~i~lvfFn~~~-~yl~k~lk~G~~v~v-sGKv~~~-~~~~qi 138 (700)
T Consensus 100 GkVASL~I~DeTG~aRLvLWD~~v~~yy-~~l~~GDVIKv~~~~Vres~~g~peL 153 (357)
T PRK08402 100 GRVASLIIYDDTGRARVVLWDAKVAEYY-NKLEVGDVIKVLDAQVRESLSGLPEL 153 (357)
T ss_pred CEEEEEEEECCCCCEEEEEECHHHHHHH-HHCCCCCEEEEECHHHHHHCCCCHHE
T ss_conf 5378999973788389998338789889-75376866998331344311797120