HHsearch alignment for GI: 254780945 and conserved domain: PRK09401
>PRK09401 reverse gyrase; Reviewed.
Probab=99.61 E-value=6.3e-13 Score=120.97 Aligned_cols=283 Identities=18% Similarity=0.282 Sum_probs=199.3
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHH
Q ss_conf 89999863024679889999999998410013430788621442236999999733444305458861279999999986
Q gi|254780945|r 261 IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEF 340 (700)
Q Consensus 261 ~~~~f~~~LPF~LT~~Q~~ai~eI~~Dl~~~~pM~RLLQGDVGSGKTiVA~~A~l~~~~~G~Q~alMaPTEILA~QH~~~ 340 (700)
T Consensus 67 f~~fF~~~~G~~~w~~Qr~WakR~~~g----~SF--aiiAPTG~GKTtfgl~~sly~a~kgkks~~i~PT~~Lv~Q~~~k 140 (1176)
T PRK09401 67 FEEFFKKKVGSEPWSLQRTWAKRLLLG----ESF--AIIAPTGVGKTTFGLVMALYLAKKGKKSYIIFPTRLLVEQVVEK 140 (1176)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHCC----CCE--EEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
T ss_conf 999999986899848899999998668----974--89888998888999999999986598399996888999999999
Q ss_pred HHHHCCCCC--CEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECHHHCCCCC---CCCCCCEEEECCCCCC---------
Q ss_conf 211014578--65899624642256676877621347548641112013345---5444417885210133---------
Q gi|254780945|r 341 IKKYTQNTQ--IIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSI---QYYKLILVIVDEQHRF--------- 406 (700)
Q Consensus 341 ~~~~~~~~~--i~v~lLtg~~~~~er~~i~~~i~~G~~~iiIGTHAL~q~~v---~F~~LgLvViDEQHRF--------- 406 (700)
T Consensus 141 l~~~~~~~~~~~~~~~y~~~~~~~~kee~~~~~~~gdfdIlitT~~fl~kn~~~l~~~~f~fifvDDVDs~LKssKnid~ 220 (1176)
T PRK09401 141 LRKLAEKVGVKVRLLYYHSSLKKKEKEEFLERLEEGDFDILVTTSQFLSKNFDELPKDRFDFVFVDDVDAVLKSSKNIDK 220 (1176)
T ss_pred HHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHH
T ss_conf 99999970998408998567766678999988655998689985676765487603568888999341877752340999
Q ss_pred -----CHHH-------------------------HHHHH---HCCCCCCCEEECHHHHHHHHHHHHHHCC---CHHHHCC
Q ss_conf -----5688-------------------------99874---0256776101010132278999975201---0111102
Q gi|254780945|r 407 -----GVQQ-------------------------RLKLT---QKATAPHVLLMTATPIPRTLVLTSLGDI---DISKITE 450 (700)
Q Consensus 407 -----GV~Q-------------------------R~~L~---~Kg~~ph~L~MtATPIPRTLal~~ygdl---dvS~i~e 450 (700)
T Consensus 221 ~l~llGf~~e~i~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~livsSAT~~prg~r~~lfreLlgFevg~~~- 299 (1176)
T PRK09401 221 LLKLLGFSEEDIEKAMELIKLKRKTEELKEEIEELEEKIREIRKKKKGVLVVSSATGRPRGIRIKLFRELLGFEVGRPR- 299 (1176)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCC-
T ss_conf 9998399999999999999975234344456778899999874368749999757778888538999998298678864-
Q ss_pred CCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEECCCCCCCHHHH
Q ss_conf 35576662079997020026899997631038738999712012211121014666666686637103120146998999
Q gi|254780945|r 451 KPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530 (700)
Q Consensus 451 ~P~gR~~I~T~~~~~~~~~~~~~~i~~~l~~g~q~y~VcPlIeese~~~~~~~~~~~~~l~~~~~~~v~~lHGkm~~~ek 530 (700)
T Consensus 300 -~~lRni~D~y~~~~~~~~~~~e~v-~~lG~GgLifv~-------~~~g~e~~~~~~~~l~~~-g~~a~~~~~~~----- 364 (1176)
T PRK09401 300 -FYLRNIVDVYIEPEDLVEKLVELV-KRLGDGGLVFVP-------TDYGKEYAEELKEYLESH-GIKAEAYSGRK----- 364 (1176)
T ss_pred -CCEEEEEEEECCCCCHHHHHHHHH-HHHCCCEEEEEE-------CCCCHHHHHHHHHHHHHC-CCEEEEEECCC-----
T ss_conf -230212577605766889999999-984895499976-------765889999999999976-96699960588-----
Q ss_pred HHHHHHHHCCCEEEEEEC----HHHHCCCCCCCCCEEEE
Q ss_conf 999999755986999980----03410468887658998
Q gi|254780945|r 531 ESVMDSFKNGTCKLLIAT----TVIEVGIDVVDASIIII 565 (700)
Q Consensus 531 ~~~m~~F~~g~~~iLvaT----tviEVGvdvpna~~mvI 565 (700)
T Consensus 365 ~~~le~f~~Ge~dvLvG~asyyg~lvRGiDlP~~irYai 403 (1176)
T PRK09401 365 KEFLEKFEEGEIDVLIGVASYYGVLVRGIDLPERIRYAI 403 (1176)
T ss_pred HHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCEEEEEE
T ss_conf 668889757886489997012452101577641168999