HHsearch alignment for GI: 254780945 and conserved domain: PRK09401

Probab=97.28  E-value=0.00075  Score=49.79  Aligned_cols=106  Identities=20%  Similarity=0.377  Sum_probs=66.3

Q ss_pred             CCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHH
Q ss_conf             75789999863024679889999999998410013430788621442236999999733444305458861279999999
Q gi|254780945|r  258 EGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQH  337 (700)
Q Consensus       258 ~~~~~~~f~~~LPF~LT~~Q~~ai~eI~~Dl~~~~pM~RLLQGDVGSGKTiVA~~A~l~~~~~G~Q~alMaPTEILA~QH  337 (700)
T Consensus       280 rg~r~~lfreLlgFevg~~~~-~lRni~-D~y~~-------~~~~~--~~~~e~v~~-----lG~GgLifv~~~~-g~e~  342 (1176)
T PRK09401        280 RGIRIKLFRELLGFEVGRPRF-YLRNIV-DVYIE-------PEDLV--EKLVELVKR-----LGDGGLVFVPTDY-GKEY  342 (1176)
T ss_pred             CCCHHHHHHHHHCCCCCCCCC-CEEEEE-EEECC-------CCCHH--HHHHHHHHH-----HCCCEEEEEECCC-CHHH
T ss_conf             885389999982986788642-302125-77605-------76688--999999998-----4895499976765-8899


Q ss_pred             HHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECHHH
Q ss_conf             986211014578658996246422566768776213475486411120
Q gi|254780945|r  338 YEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHAL  385 (700)
Q Consensus       338 ~~~~~~~~~~~~i~v~lLtg~~~~~er~~i~~~i~~G~~~iiIGTHAL  385 (700)
T Consensus       343 ~~~~~~~l~~~g~~a~~~~~~-----~~~~le~f~~Ge~dvLvG~asy  385 (1176)
T PRK09401        343 AEELKEYLESHGIKAEAYSGR-----KKEFLEKFEEGEIDVLIGVASY  385 (1176)
T ss_pred             HHHHHHHHHHCCCEEEEEECC-----CHHHHHHHHCCCCCEEEEECCC
T ss_conf             999999999769669996058-----8668889757886489997012