HHsearch alignment for GI: 254780945 and conserved domain: PRK10590
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional.
Probab=99.94 E-value=1.7e-22 Score=196.03 Aligned_cols=320 Identities=18% Similarity=0.271 Sum_probs=227.4
Q ss_pred CCCHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHH---------CCEEE
Q ss_conf 775789999863024-67988999999999841001343078862144223699999973344430---------54588
Q gi|254780945|r 257 VEGKIAQKILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---------GQAVI 326 (700)
Q Consensus 257 ~~~~~~~~f~~~LPF-~LT~~Q~~ai~eI~~Dl~~~~pM~RLLQGDVGSGKTiVA~~A~l~~~~~G---------~Q~al 326 (700)
T Consensus 8 L~~~ll~aL-~~~G~~~PTpIQ~~aIP~iL~G------rDvl~~A~TGSGKTlAflLPil~~l~~~~~~~~~~~~~~aLI 80 (457)
T PRK10590 8 LSPDILRAV-AEQGYREPTPIQQQAIPAVLEG------RDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALI 80 (457)
T ss_pred CCHHHHHHH-HHCCCCCCCHHHHHHHHHHHCC------CCEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEE
T ss_conf 899999999-9779999999999999999779------988998898118999999999999863676544568824999
Q ss_pred EEHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECH-----HHCCCCCCCCCCCEEEEC
Q ss_conf 612799999999862110145786589962464225667687762134754864111-----201334554444178852
Q gi|254780945|r 327 MAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-----ALFQDSIQYYKLILVIVD 401 (700)
Q Consensus 327 MaPTEILA~QH~~~~~~~~~~~~i~v~lLtg~~~~~er~~i~~~i~~G~~~iiIGTH-----AL~q~~v~F~~LgLvViD 401 (700)
T Consensus 81 L~PTRELA~Qi~~~~~~l~~~~~~~~~~~~Gg~~~~~q---~~~l~~-~~dIlVaTPGRLldl~~~~~~~l~~v~~lVlD 156 (457)
T PRK10590 81 LTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQ---MMKLRG-GVDVLVATPGRLLDLEHQNAVKLDQVEILVLD 156 (457)
T ss_pred ECCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHH---HHHHCC-CCCEEEECCHHHHHHHHCCCCCCCCCEEEEEE
T ss_conf 76879999999999997425589459999799777599---998618-99989989288898886267765752399983
Q ss_pred CCCCC---C-HHHHHHHHHC-CCCCCCEEECHHHHH--HHHHHHHHHC-CCHHHHCCCCCCCCCCEEEEEE--CCCHHHH
Q ss_conf 10133---5-6889987402-567761010101322--7899997520-1011110235576662079997--0200268
Q gi|254780945|r 402 EQHRF---G-VQQRLKLTQK-ATAPHVLLMTATPIP--RTLVLTSLGD-IDISKITEKPAGRKPIKTVIIP--INRIDEV 471 (700)
Q Consensus 402 EQHRF---G-V~QR~~L~~K-g~~ph~L~MtATPIP--RTLal~~ygd-ldvS~i~e~P~gR~~I~T~~~~--~~~~~~~ 471 (700)
T Consensus 157 EAD~mLd~gF~~di~~Il~~lp~~rQ~llfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~-~~~i~q~~~~v~~~~k~~~ 235 (457)
T PRK10590 157 EADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTA-SEQVTQHVHFVDKKRKREL 235 (457)
T ss_pred CCHHHHCCCCHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCC-CCCEEEEEEEECHHHHHHH
T ss_conf 705651566536689998638765268999504888999999997689889996367665-6130489999566789999
Q ss_pred HHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHCCCEEEEEECHHH
Q ss_conf 99997631038738999712012211121014666666686637103120146998999999999755986999980034
Q gi|254780945|r 472 IERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVI 551 (700)
Q Consensus 472 ~~~i~~~l~~g~q~y~VcPlIeese~~~~~~~~~~~~~l~~~~~~~v~~lHGkm~~~ek~~~m~~F~~g~~~iLvaTtvi 551 (700)
T Consensus 236 L~~ll~~~-~~~~~iIF~~tk--------~~a~~l~~~L~~~-g~~~~~lHg~~sq~~R~~~l~~F~~g~~~vLVaTDva 305 (457)
T PRK10590 236 LSQMIGKG-NWQQVLVFTRTK--------HGANHLAEQLNKD-GIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIA 305 (457)
T ss_pred HHHHHHHC-CCCCEEEEECHH--------HHHHHHHHHHHHC-CCCCEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCC
T ss_conf 99998615-866335884119--------9999999998556-9982323247899999999999986998299957701
Q ss_pred HCCCCCCCCCEEEEECHHHCCHHHHHHHHHCCCCCCCCEEEEEEECCC
Q ss_conf 104688876589985852547468877301166789835999970888
Q gi|254780945|r 552 EVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599 (700)
Q Consensus 552 EVGvdvpna~~mvI~~aerfGLsqLHQLRGRVGRg~~~s~c~l~~~~~ 599 (700)
T Consensus 306 aRGiDi~~V~~VInyD~P~~~e~YvHR-iGRTGRaG~~G~ait~v~~~ 352 (457)
T PRK10590 306 ARGLDIEELPHVVNYELPNVPEDYVHR-IGRTGRAAATGEALSLVCVD 352 (457)
T ss_pred CCCCCCCCCCEEEEECCCCCHHHEECC-CCCCCCCCCCEEEEEEECHH
T ss_conf 155663568879993899974450022-67060589953699986689