HHsearch alignment for GI: 254780945 and conserved domain: PRK10689

>PRK10689 transcription-repair coupling factor; Provisional.
Probab=100.00  E-value=0  Score=1045.40  Aligned_cols=414  Identities=36%  Similarity=0.526  Sum_probs=388.0

Q ss_pred             HHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf             77655554320357678775789999863024679889999999998410013430788621442236999999733444
Q gi|254780945|r  240 LLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE  319 (700)
Q Consensus       240 l~~~r~~~~~~~~~~~~~~~~~~~~f~~~LPF~LT~~Q~~ai~eI~~Dl~~~~pM~RLLQGDVGSGKTiVA~~A~l~~~~  319 (700)
T Consensus       568 Ll~lYA~R~~~~G~af~~d~~~~~eFe~~FpyeET~DQl~AI~eV~~DMes~~PMDRLiCGDVGfGKTEVA~RAAFkav~  647 (1148)
T PRK10689        568 LLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE  647 (1148)
T ss_pred             HHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf             99999987205688678984999999960999787689999999987763886774156768888779999999999996


Q ss_pred             HHCCEEEEEHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECHHHCCCCCCCCCCCEEE
Q ss_conf             30545886127999999998621101457865899624642256676877621347548641112013345544441788
Q gi|254780945|r  320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI  399 (700)
Q Consensus       320 ~G~Q~alMaPTEILA~QH~~~~~~~~~~~~i~v~lLtg~~~~~er~~i~~~i~~G~~~iiIGTHAL~q~~v~F~~LgLvV  399 (700)
T Consensus       648 ~gkQVavlvPTTiLA~QH~~tF~~Rf~~~pv~i~~LsRf~s~ke~~~i~~~l~~G~idIvIGTH~ll~~dv~f~~LGLlI  727 (1148)
T PRK10689        648 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLI  727 (1148)
T ss_pred             CCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCEEEHHHHHHCCCCCCCCCCEEE
T ss_conf             39808998366223799999999876415733775038888999999999986699877620488866986546664378


Q ss_pred             ECCCCCCCHHHHHHHHHCCCCCCCEEECHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCEEEEEECCCHHHHHHHHHHHH
Q ss_conf             52101335688998740256776101010132278999975201011110235576662079997020026899997631
Q gi|254780945|r  400 VDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERLKVVL  479 (700)
Q Consensus       400 iDEQHRFGV~QR~~L~~Kg~~ph~L~MtATPIPRTLal~~ygdldvS~i~e~P~gR~~I~T~~~~~~~~~~~~~~i~~~l  479 (700)
T Consensus       728 iDEEqrFGV~~KE~lk~l~~~vdvLtltATPIPRTL~msl~G~rdlS~i~tpP~~R~~v~T~v~~~~~~-~i~eai~re~  806 (1148)
T PRK10689        728 VDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSL-VVREAILREI  806 (1148)
T ss_pred             ECCCHHCCHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHCCCCCEEEECCCCCCCCCCEEEEECCCHH-HHHHHHHHHH
T ss_conf             601021379999999722899878976255644699998807733022136999898708998358729-9999999999


Q ss_pred             CCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCC-CEECCCCCCCHHHHHHHHHHHHCCCEEEEEECHHHHCCCCCC
Q ss_conf             0387389997120122111210146666666866371-031201469989999999997559869999800341046888
Q gi|254780945|r  480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVV  558 (700)
Q Consensus       480 ~~g~q~y~VcPlIeese~~~~~~~~~~~~~l~~~~~~-~v~~lHGkm~~~ek~~~m~~F~~g~~~iLvaTtviEVGvdvp  558 (700)
T Consensus       807 ~rggq~~~~~~~~~--------~i~~~~~~~~~~~p~~~~~~~hg~m~~~~~e~~m~~f~~~~~~~l~~ttiie~g~dip  878 (1148)
T PRK10689        807 LRGGQVYYLYNDVE--------NIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIP  878 (1148)
T ss_pred             HHCCEEEEEECCHH--------HHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCEEECCCCCC
T ss_conf             81880899953254--------1999999999748777189998999989999999999759988999897876586677


Q ss_pred             CCCEEEEECHHHCCHHHHHHHHHCCCCCCCCEEEEEEECC--CCCHHHHHHHHHHHHHCH---HHHHHHHHHHHCCCCCC
Q ss_conf             7658998585254746887730116678983599997088--899879999999984142---58999999852063000
Q gi|254780945|r  559 DASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHP--PLSKNSYTRLSVLKNTED---GFLIAEEDLKQRKEGEI  633 (700)
Q Consensus       559 na~~mvI~~aerfGLsqLHQLRGRVGRg~~~s~c~l~~~~--~~~~~~~~Rl~~l~~~~d---Gf~iAe~Dl~lRG~G~~  633 (700)
T Consensus       879 ~ant~ii~~a~~~gl~ql~qlrgrvgr~~~~ayaYll~~~~~~lt~~A~kRL~ai~~~~~lGsGf~iA~~DLeIRGaG~l  958 (1148)
T PRK10689        879 TANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGEL  958 (1148)
T ss_pred             CCCEEEEECHHHCCHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCC
T ss_conf             88479997532145577775436557788707999986787778989999999999706776439999987722778567


Q ss_pred             CCCHHCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             2600069874400038875999999999999
Q gi|254780945|r  634 LGIKQSGMPKFLIAQPELHDSLLEIARKDAK  664 (700)
Q Consensus       634 ~G~~QsG~~~~~~~d~~~d~~ll~~a~~~a~  664 (700)
T Consensus       959 LG~~QsG~i~~vG~~lY--~~mL~~av~~lk  987 (1148)
T PRK10689        959 LGEEQSGSMETIGFSLY--MELLENAVDALK  987 (1148)
T ss_pred             CCCCCCCCHHHCCHHHH--HHHHHHHHHHHH
T ss_conf             88645631555069999--999999999986