HHsearch alignment for GI: 254780945 and conserved domain: PRK11057

>PRK11057 ATP-dependent DNA helicase RecQ; Provisional.
Probab=99.88  E-value=1.6e-18  Score=164.81  Aligned_cols=309  Identities=18%  Similarity=0.285  Sum_probs=226.3

Q ss_pred             HHHHCCC-CCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHH
Q ss_conf             9863024-679889999999998410013430788621442236999999733444305458861279999999986211
Q gi|254780945|r  265 ILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKK  343 (700)
Q Consensus       265 f~~~LPF-~LT~~Q~~ai~eI~~Dl~~~~pM~RLLQGDVGSGKTiVA~~A~l~~~~~G~Q~alMaPTEILA~QH~~~~~~  343 (700)
T Consensus        17 L~~~FG~~~Fr~~Q~e~i~~~l~g--~D----~l~~mpTG~GKSlcyQlPal~--~-~g~tiVisPLisLm~DQv~~L~~   87 (607)
T PRK11057         17 LQETFGYQQFRPGQEEIIDTVLSG--RD----CLVVMPTGGGKSLCYQIPALV--L-DGLTLVVSPLISLMKDQVDQLLA   87 (607)
T ss_pred             HHHHCCCCCCCHHHHHHHHHHHCC--CC----EEEECCCCCHHHHHHHHHHHH--C-CCCEEEECCHHHHHHHHHHHHHH
T ss_conf             998669843457699999999869--98----899878995597999999987--7-99889986879999999999997


Q ss_pred             HCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECH-HH----CCCCCCCCCCCEEEECCCCC---CCHHHHHH--
Q ss_conf             0145786589962464225667687762134754864111-20----13345544441788521013---35688998--
Q gi|254780945|r  344 YTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-AL----FQDSIQYYKLILVIVDEQHR---FGVQQRLK--  413 (700)
Q Consensus       344 ~~~~~~i~v~lLtg~~~~~er~~i~~~i~~G~~~iiIGTH-AL----~q~~v~F~~LgLvViDEQHR---FGV~QR~~--  413 (700)
T Consensus        88 ~----gi~a~~l~s~~~~~e~~~~~~~~~~g~~~llyvtPErl~~~~~~~~l~~~~i~~~viDEAHcvs~WGhdFRp~Y~  163 (607)
T PRK11057         88 N----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYA  163 (607)
T ss_pred             C----CCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEECHHHHCCHHHHHHHHHCCCCEEEEEHHHHHHHCCCCCHHHHH
T ss_conf             8----992999569999999999999997599879998855856978999997188664885306667541550038899


Q ss_pred             ----HHHCCCCCCCEEECHHHHHHHHHHHH--HHCCCHHHHCCCCCCCCCCEEEEEEC-CCHHHHHHHHHHHHCCCCEEE
Q ss_conf             ----74025677610101013227899997--52010111102355766620799970-200268999976310387389
Q gi|254780945|r  414 ----LTQKATAPHVLLMTATPIPRTLVLTS--LGDIDISKITEKPAGRKPIKTVIIPI-NRIDEVIERLKVVLSEGKKAY  486 (700)
Q Consensus       414 ----L~~Kg~~ph~L~MtATPIPRTLal~~--ygdldvS~i~e~P~gR~~I~T~~~~~-~~~~~~~~~i~~~l~~g~q~y  486 (700)
T Consensus       164 ~l~~l~~~~~~~p~~AlTATAt~~v~~di~~~L~l~~~~~~~-~~f~RpNl~~~v~~~~~~~~~~~~~~~~~--~~~sgI  240 (607)
T PRK11057        164 ALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQI-SSFDRPNIRYMLMEKFKPLDQLMRYVQEQ--RGKSGI  240 (607)
T ss_pred             HHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHCCCCCCEEE-CCCCCCCCEEEEEECCCHHHHHHHHHHHC--CCCCEE
T ss_conf             999999976999748999636878999999970899980782-57788874145554477399999998706--899779


Q ss_pred             EEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHCCCEEEEEECHHHHCCCCCCCCCEEEEE
Q ss_conf             99712012211121014666666686637103120146998999999999755986999980034104688876589985
Q gi|254780945|r  487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE  566 (700)
Q Consensus       487 ~VcPlIeese~~~~~~~~~~~~~l~~~~~~~v~~lHGkm~~~ek~~~m~~F~~g~~~iLvaTtviEVGvdvpna~~mvI~  566 (700)
T Consensus       241 IYc~tr--------k~~e~la~~L~~~-G~~~~~YHagl~~~~R~~~q~~f~~~~~~vivAT~AFGMGIdk~dVR~ViH~  311 (607)
T PRK11057        241 IYCNSR--------AKVEDTAARLQSR-GISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHF  311 (607)
T ss_pred             EEECCH--------HHHHHHHHHHHHC-CCCEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCCCCCEEEEC
T ss_conf             996928--------9999999999857-9754530589997899999998756887589975011057677776679977


Q ss_pred             CHHHCCHHHHHHHHHCCCCCCCCEEEEEEECCC
Q ss_conf             852547468877301166789835999970888
Q gi|254780945|r  567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP  599 (700)
Q Consensus       567 ~aerfGLsqLHQLRGRVGRg~~~s~c~l~~~~~  599 (700)
T Consensus       312 ~~P-~s~e~yyQE~GRAGRDG~~a~c~l~y~~~  343 (607)
T PRK11057        312 DIP-RNIESYYQETGRAGRDGLPAEAMLFYDPA  343 (607)
T ss_pred             CCC-CCHHHHHHHHHHCCCCCCCCEEEEEECHH
T ss_conf             899-99999999886352589854189985687