HHsearch alignment for GI: 254780945 and conserved domain: PRK11057
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional.
Probab=99.88 E-value=1.6e-18 Score=164.81 Aligned_cols=309 Identities=18% Similarity=0.285 Sum_probs=226.3
Q ss_pred HHHHCCC-CCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHH
Q ss_conf 9863024-679889999999998410013430788621442236999999733444305458861279999999986211
Q gi|254780945|r 265 ILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKK 343 (700)
Q Consensus 265 f~~~LPF-~LT~~Q~~ai~eI~~Dl~~~~pM~RLLQGDVGSGKTiVA~~A~l~~~~~G~Q~alMaPTEILA~QH~~~~~~ 343 (700)
T Consensus 17 L~~~FG~~~Fr~~Q~e~i~~~l~g--~D----~l~~mpTG~GKSlcyQlPal~--~-~g~tiVisPLisLm~DQv~~L~~ 87 (607)
T PRK11057 17 LQETFGYQQFRPGQEEIIDTVLSG--RD----CLVVMPTGGGKSLCYQIPALV--L-DGLTLVVSPLISLMKDQVDQLLA 87 (607)
T ss_pred HHHHCCCCCCCHHHHHHHHHHHCC--CC----EEEECCCCCHHHHHHHHHHHH--C-CCCEEEECCHHHHHHHHHHHHHH
T ss_conf 998669843457699999999869--98----899878995597999999987--7-99889986879999999999997
Q ss_pred HCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECH-HH----CCCCCCCCCCCEEEECCCCC---CCHHHHHH--
Q ss_conf 0145786589962464225667687762134754864111-20----13345544441788521013---35688998--
Q gi|254780945|r 344 YTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-AL----FQDSIQYYKLILVIVDEQHR---FGVQQRLK-- 413 (700)
Q Consensus 344 ~~~~~~i~v~lLtg~~~~~er~~i~~~i~~G~~~iiIGTH-AL----~q~~v~F~~LgLvViDEQHR---FGV~QR~~-- 413 (700)
T Consensus 88 ~----gi~a~~l~s~~~~~e~~~~~~~~~~g~~~llyvtPErl~~~~~~~~l~~~~i~~~viDEAHcvs~WGhdFRp~Y~ 163 (607)
T PRK11057 88 N----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYA 163 (607)
T ss_pred C----CCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEECHHHHCCHHHHHHHHHCCCCEEEEEHHHHHHHCCCCCHHHHH
T ss_conf 8----992999569999999999999997599879998855856978999997188664885306667541550038899
Q ss_pred ----HHHCCCCCCCEEECHHHHHHHHHHHH--HHCCCHHHHCCCCCCCCCCEEEEEEC-CCHHHHHHHHHHHHCCCCEEE
Q ss_conf ----74025677610101013227899997--52010111102355766620799970-200268999976310387389
Q gi|254780945|r 414 ----LTQKATAPHVLLMTATPIPRTLVLTS--LGDIDISKITEKPAGRKPIKTVIIPI-NRIDEVIERLKVVLSEGKKAY 486 (700)
Q Consensus 414 ----L~~Kg~~ph~L~MtATPIPRTLal~~--ygdldvS~i~e~P~gR~~I~T~~~~~-~~~~~~~~~i~~~l~~g~q~y 486 (700)
T Consensus 164 ~l~~l~~~~~~~p~~AlTATAt~~v~~di~~~L~l~~~~~~~-~~f~RpNl~~~v~~~~~~~~~~~~~~~~~--~~~sgI 240 (607)
T PRK11057 164 ALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQI-SSFDRPNIRYMLMEKFKPLDQLMRYVQEQ--RGKSGI 240 (607)
T ss_pred HHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHCCCCCCEEE-CCCCCCCCEEEEEECCCHHHHHHHHHHHC--CCCCEE
T ss_conf 999999976999748999636878999999970899980782-57788874145554477399999998706--899779
Q ss_pred EEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHCCCEEEEEECHHHHCCCCCCCCCEEEEE
Q ss_conf 99712012211121014666666686637103120146998999999999755986999980034104688876589985
Q gi|254780945|r 487 WICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566 (700)
Q Consensus 487 ~VcPlIeese~~~~~~~~~~~~~l~~~~~~~v~~lHGkm~~~ek~~~m~~F~~g~~~iLvaTtviEVGvdvpna~~mvI~ 566 (700)
T Consensus 241 IYc~tr--------k~~e~la~~L~~~-G~~~~~YHagl~~~~R~~~q~~f~~~~~~vivAT~AFGMGIdk~dVR~ViH~ 311 (607)
T PRK11057 241 IYCNSR--------AKVEDTAARLQSR-GISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHF 311 (607)
T ss_pred EEECCH--------HHHHHHHHHHHHC-CCCEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCCCCCEEEEC
T ss_conf 996928--------9999999999857-9754530589997899999998756887589975011057677776679977
Q ss_pred CHHHCCHHHHHHHHHCCCCCCCCEEEEEEECCC
Q ss_conf 852547468877301166789835999970888
Q gi|254780945|r 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPP 599 (700)
Q Consensus 567 ~aerfGLsqLHQLRGRVGRg~~~s~c~l~~~~~ 599 (700)
T Consensus 312 ~~P-~s~e~yyQE~GRAGRDG~~a~c~l~y~~~ 343 (607)
T PRK11057 312 DIP-RNIESYYQETGRAGRDGLPAEAMLFYDPA 343 (607)
T ss_pred CCC-CCHHHHHHHHHHCCCCCCCCEEEEEECHH
T ss_conf 899-99999999886352589854189985687