HHsearch alignment for GI: 254780945 and conserved domain: PRK11192
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional.
Probab=99.97 E-value=1.6e-26 Score=227.60 Aligned_cols=332 Identities=19% Similarity=0.256 Sum_probs=238.0
Q ss_pred CCCCHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHH-------HHCCEEEE
Q ss_conf 8775789999863024-679889999999998410013430788621442236999999733444-------30545886
Q gi|254780945|r 256 NVEGKIAQKILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE-------AGGQAVIM 327 (700)
Q Consensus 256 ~~~~~~~~~f~~~LPF-~LT~~Q~~ai~eI~~Dl~~~~pM~RLLQGDVGSGKTiVA~~A~l~~~~-------~G~Q~alM 327 (700)
T Consensus 9 ~L~~~l~~~L-~~~g~~~pT~IQ~~aIp~il~g------~dvl~~A~TGSGKTlaylLPil~~l~~~~~~~~~~~~~LIl 81 (417)
T PRK11192 9 DLDPSLLEAL-QDKGYTRPTAIQAEAIPPALDG------RDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILIL 81 (417)
T ss_pred CCCHHHHHHH-HHCCCCCCCHHHHHHHHHHHCC------CCEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
T ss_conf 9899999999-9779999999999999999779------98899899986799999999999987521036899649999
Q ss_pred EHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECHH-----HCCCCCCCCCCCEEEECC
Q ss_conf 127999999998621101457865899624642256676877621347548641112-----013345544441788521
Q gi|254780945|r 328 APIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDE 402 (700)
Q Consensus 328 aPTEILA~QH~~~~~~~~~~~~i~v~lLtg~~~~~er~~i~~~i~~G~~~iiIGTHA-----L~q~~v~F~~LgLvViDE 402 (700)
T Consensus 82 ~PTrELa~Qi~~~~~~l~~~~~i~~~~i~Gg~~~~~q~~~l~----~~~dIlV~TPgRL~~~l~~~~~~l~~l~~lVlDE 157 (417)
T PRK11192 82 TPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFS----ENQDIVVATPGRLLQYIKEENFDCRAVETLILDE 157 (417)
T ss_pred ECHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHH----CCCCEEEECCCHHHHHHHHCCCCCCCCCEEEEEC
T ss_conf 471999999999999864005730599856878799999983----6999899786077778863670104574899967
Q ss_pred CCCCCH----HHHHHHHHC-CCCCCCEEECHHHH---HHHHHHHHHHCCCHHHHCCCCCCC--CCCEEEEEECCCHHHHH
Q ss_conf 013356----889987402-56776101010132---278999975201011110235576--66207999702002689
Q gi|254780945|r 403 QHRFGV----QQRLKLTQK-ATAPHVLLMTATPI---PRTLVLTSLGDIDISKITEKPAGR--KPIKTVIIPINRIDEVI 472 (700)
Q Consensus 403 QHRFGV----~QR~~L~~K-g~~ph~L~MtATPI---PRTLal~~ygdldvS~i~e~P~gR--~~I~T~~~~~~~~~~~~ 472 (700)
T Consensus 158 AD~mld~gF~~~i~~I~~~~~~~~Q~llfSATl~~~~v~~l~~~~l~~--p~~i~~~~~~~~~~~i~q~~~~~~~~~~k~ 235 (417)
T PRK11192 158 ADRMLDMGFAQDVEHIAAETRWRKQTLLFSATLEGDGVQDFAERLLND--PVEVDAEPSRRERKKIHQWYYRADDLEHKT 235 (417)
T ss_pred CCCCCCCCCHHHHHHHHHHCCCCCEEEEEEEECCHHHHHHHHHHHCCC--CEEEEECCCCCCCCCEEEEEEEECCHHHHH
T ss_conf 552111354789999986476772389997326847899999983679--889996467666674369999937689999
Q ss_pred HHHHHHHCC--CCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHCCCEEEEEECHH
Q ss_conf 999763103--873899971201221112101466666668663710312014699899999999975598699998003
Q gi|254780945|r 473 ERLKVVLSE--GKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTV 550 (700)
Q Consensus 473 ~~i~~~l~~--g~q~y~VcPlIeese~~~~~~~~~~~~~l~~~~~~~v~~lHGkm~~~ek~~~m~~F~~g~~~iLvaTtv 550 (700)
T Consensus 236 ~~L~~ll~~~~~~k~iIF~~t~--------~~~~~l~~~L~~~-g~~~~~lhg~l~q~~R~~~l~~F~~g~~~vLVaTDv 306 (417)
T PRK11192 236 ALLCHLLKQEEVTRSIVFVRTR--------ERVHELAGWLRKA-GINCCYLEGEMVQKKRNEAIKRLTDGRVNVLVATDV 306 (417)
T ss_pred HHHHHHHHCCCCCCCEEEECCH--------HHHHHHHHHHHCC-CCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCH
T ss_conf 9999998534766521531124--------6676898865314-883575400179999999999997699989998124
Q ss_pred HHCCCCCCCCCEEEEECHHHCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 4104688876589985852547468877301166789835999970888998799999999841
Q gi|254780945|r 551 IEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT 614 (700)
Q Consensus 551 iEVGvdvpna~~mvI~~aerfGLsqLHQLRGRVGRg~~~s~c~l~~~~~~~~~~~~Rl~~l~~~ 614 (700)
T Consensus 307 aaRGiDi~~V~~VInyd~P~~~~~YvHR-iGRTGR~G~~G~ait~v~~~----d~~~~~~ie~~ 365 (417)
T PRK11192 307 AARGIDIDDISHVINFDMPRSADTYLHR-IGRTGRAGKKGTAISLVEAH----DHLLLGKIERY 365 (417)
T ss_pred HHCCCCCCCCCEEEEECCCCCHHHHHHH-CCHHHCCCCCEEEEEEECHH----HHHHHHHHHHH
T ss_conf 3467770469889997999988892330-67723489954899987489----99999999999