HHsearch alignment for GI: 254780945 and conserved domain: PRK11634
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional.
Probab=99.94 E-value=7.2e-23 Score=198.95 Aligned_cols=331 Identities=20% Similarity=0.282 Sum_probs=232.7
Q ss_pred CCCHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHH---HCCEEEEEHHHH
Q ss_conf 775789999863024-6798899999999984100134307886214422369999997334443---054588612799
Q gi|254780945|r 257 VEGKIAQKILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIGI 332 (700)
Q Consensus 257 ~~~~~~~~f~~~LPF-~LT~~Q~~ai~eI~~Dl~~~~pM~RLLQGDVGSGKTiVA~~A~l~~~~~---G~Q~alMaPTEI 332 (700)
T Consensus 13 L~~~ll~a-L~~~Gf~~PTpIQ~~aIP~iL~G------kDvi~~AqTGSGKTlAFlLPiL~~l~~~~~~pqaLIL~PTRE 85 (629)
T PRK11634 13 LKAPILEA-LNDLGYEKPSPIQAECIPHLLNG------RDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRE 85 (629)
T ss_pred CCHHHHHH-HHHCCCCCCCHHHHHHHHHHHCC------CCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCHH
T ss_conf 89999999-99879999999999999999679------988997888478999999999998662368986899789989
Q ss_pred HHHHHHHHHHHHCCCC-CCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECHH-H----CCCCCCCCCCCEEEECCCCC-
Q ss_conf 9999998621101457-865899624642256676877621347548641112-0----13345544441788521013-
Q gi|254780945|r 333 LAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA-L----FQDSIQYYKLILVIVDEQHR- 405 (700)
Q Consensus 333 LA~QH~~~~~~~~~~~-~i~v~lLtg~~~~~er~~i~~~i~~G~~~iiIGTHA-L----~q~~v~F~~LgLvViDEQHR- 405 (700)
T Consensus 86 LA~QV~~~~~~l~~~~~~i~v~~l~GG~~~~---~q~~~L~~g-~~IVVgTPGRL~d~l~~~~l~L~~l~~lVLDEAD~m 161 (629)
T PRK11634 86 LAVQVAEAMTDFSKHMRGVNVVALYGGQRYD---VQLRALRQG-PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEM 161 (629)
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEEECCCCHH---HHHHHHCCC-CCEEEECHHHHHHHHHCCCCCHHHCCEEEEECHHHH
T ss_conf 9999999999997217997799998997789---999986279-999996989999999729641200767898671553
Q ss_pred ----CCHHHHHHHHHC-CCCCCCEEECHHHHH--HHHHHHHHHCCCHHHHCCCCCCCCCCEEEEEEC--C-CHHHHHHHH
Q ss_conf ----356889987402-567761010101322--789999752010111102355766620799970--2-002689999
Q gi|254780945|r 406 ----FGVQQRLKLTQK-ATAPHVLLMTATPIP--RTLVLTSLGDIDISKITEKPAGRKPIKTVIIPI--N-RIDEVIERL 475 (700)
Q Consensus 406 ----FGV~QR~~L~~K-g~~ph~L~MtATPIP--RTLal~~ygdldvS~i~e~P~gR~~I~T~~~~~--~-~~~~~~~~i 475 (700)
T Consensus 162 L~~gF~-~di~~Il~~lp~~~Qt~LfSATmp~~i~~la~~~l~~P~~i~i~~~~~t~~~i~q~~~~v~~~~K~~aL~~~L 240 (629)
T PRK11634 162 LRMGFI-EDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL 240 (629)
T ss_pred CCCCCH-HHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEEEECCHHHHHHHHHHH
T ss_conf 363659-9999999867403144666314659999999987569879740455555776305999965245799999998
Q ss_pred HHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHCCCEEEEEECHHHHCCC
Q ss_conf 76310387389997120122111210146666666866371031201469989999999997559869999800341046
Q gi|254780945|r 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555 (700)
Q Consensus 476 ~~~l~~g~q~y~VcPlIeese~~~~~~~~~~~~~l~~~~~~~v~~lHGkm~~~ek~~~m~~F~~g~~~iLvaTtviEVGv 555 (700)
T Consensus 241 ~~--~~~~~~IIF~~Tk--------~~~~~l~~~L~~-~g~~~~~LHgdm~q~~R~~~l~~Fr~g~~~ILVaTDvaARGL 309 (629)
T PRK11634 241 EA--EDFDAAIIFVRTK--------NATLEVAEALER-NGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGL 309 (629)
T ss_pred HH--CCCCEEEEEEECH--------HHHHHHHHHHHH-CCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCC
T ss_conf 61--5888489998227--------889999999997-699657656899999999999999759998898786210557
Q ss_pred CCCCCCEEEEECHHHCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHC
Q ss_conf 888765899858525474688773011667898359999708889987999999998414
Q gi|254780945|r 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615 (700)
Q Consensus 556 dvpna~~mvI~~aerfGLsqLHQLRGRVGRg~~~s~c~l~~~~~~~~~~~~Rl~~l~~~~ 615 (700)
T Consensus 310 Di~~V~~VINyDlP~d~e~YVHR-iGRTGRaGr~G~Aitfv~~~----e~~~l~~ier~~ 364 (629)
T PRK11634 310 DVERISLVVNYDIPMDSESYVHR-IGRTGRAGRAGRALLFVENR----ERRLLRNIERTM 364 (629)
T ss_pred CCCCCCEEEEECCCCCHHHCCCC-CCCCCCCCCCEEEEEEECHH----HHHHHHHHHHHH
T ss_conf 72568889996898974340102-58331689964699988889----999999999997