HHsearch alignment for GI: 254780945 and conserved domain: PRK11664
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional.
Probab=99.60 E-value=2.4e-12 Score=116.42 Aligned_cols=293 Identities=19% Similarity=0.262 Sum_probs=194.8
Q ss_pred HHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHHCC-CCCCEEEEEEC
Q ss_conf 99999998410013430788621442236999999733444305458861279999999986211014-57865899624
Q gi|254780945|r 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQ-NTQIIVEIITG 357 (700)
Q Consensus 279 ~ai~eI~~Dl~~~~pM~RLLQGDVGSGKTiVA~~A~l~~~~~G~Q~alMaPTEILA~QH~~~~~~~~~-~~~i~v~lLtg 357 (700)
T Consensus 8 ~~~~~i~~~l~~~~~--~vl~a~tGsGKtTqvP~~ll~~~~~~g~I~~~qPRR~AA~s~A~RvA~e~~e~~G~~VGY~vR 85 (812)
T PRK11664 8 AVLPELLTALKTAPQ--VLLKAPTGAGKSTWLPLQLLQQGGINGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMR 85 (812)
T ss_pred HHHHHHHHHHHHCCE--EEEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHHHHCCCCCCEEEEEEC
T ss_conf 899999999997997--999908999989999999996468899389938839999999999999729999986757825
Q ss_pred CCCHHHHHHHHHHHCCCCCEEEEECHHHC----CCCCCCCCCCEEEECCCCCCCHHHHHHH--H---HCC--CCCCCEEE
Q ss_conf 64225667687762134754864111201----3345544441788521013356889987--4---025--67761010
Q gi|254780945|r 358 NMPQAHRRKALERIAHGQAHIIIGTHALF----QDSIQYYKLILVIVDEQHRFGVQQRLKL--T---QKA--TAPHVLLM 426 (700)
Q Consensus 358 ~~~~~er~~i~~~i~~G~~~iiIGTHAL~----q~~v~F~~LgLvViDEQHRFGV~QR~~L--~---~Kg--~~ph~L~M 426 (700)
T Consensus 86 ~e~----------~~s~~Tri~~~T~GiLlr~l~~dp~L~~~~~vI~DE~HER~l~~Dl~l~l~~~~~~~~r~dLklvvM 155 (812)
T PRK11664 86 AES----------KVGPNTRLEVVTEGILTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIM 155 (812)
T ss_pred CCC----------CCCCCCEEEEECHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 677----------8899857999755899999724977677888999575468751899999999999861898289998
Q ss_pred CHHHHHHHHHHHHHHCCCHHHHCCCCCCCC-CCEEEEEECCCHHHHHHH----HHHHHCC-CCEEEEEECCCCCCCCCCC
Q ss_conf 101322789999752010111102355766-620799970200268999----9763103-8738999712012211121
Q gi|254780945|r 427 TATPIPRTLVLTSLGDIDISKITEKPAGRK-PIKTVIIPINRIDEVIER----LKVVLSE-GKKAYWICPQIEEKKESNF 500 (700)
Q Consensus 427 tATPIPRTLal~~ygdldvS~i~e~P~gR~-~I~T~~~~~~~~~~~~~~----i~~~l~~-g~q~y~VcPlIeese~~~~ 500 (700)
T Consensus 156 SATld~~~~~~-~~~~~~~i~~----~gr~fpV~~~y~~~~~~~~~~~~~~~~i~~~~~~~~G~iLvFLPG~~------- 223 (812)
T PRK11664 156 SATLDNDRLQQ-LLPDAPYIES----EGRSFPVERRYQPLPAHQRFDEAVAVATAELLRQESGSLLLFLPGVG------- 223 (812)
T ss_pred CCCCCHHHHHH-HCCCCCEEEE----CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCHH-------
T ss_conf 47888488997-5899988987----87433115785468852069999999999997358998899769989-------
Q ss_pred CHHHHHHHHHHHHCCC--CEECCCCCCCHHHHHHHHHHHHCCCEEEEEECHHHHCCCCCCCCCEEEE--------ECHHH
Q ss_conf 0146666666866371--0312014699899999999975598699998003410468887658998--------58525
Q gi|254780945|r 501 RSVVERFNSLHEHFTS--SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIII--------ENAEH 570 (700)
Q Consensus 501 ~~~~~~~~~l~~~~~~--~v~~lHGkm~~~ek~~~m~~F~~g~~~iLvaTtviEVGvdvpna~~mvI--------~~aer 570 (700)
T Consensus 224 -EI~~~~~~L~~~~~~~~~i~pL~g~l~~~~Q~~~~~~~~~g~rKvIlaTnIAEtSlTI~gV~~VIDsG~~r~~~~d~~- 301 (812)
T PRK11664 224 -EIQRVQEQLASRVGSDVLLCPLYGALSLAEQQKAILPAPAGMRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPK- 301 (812)
T ss_pred -HHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEECCCHHCEEEECCEEEEEECHHHHHHEECCC-
T ss_conf -999999998633557808996447899889877606799995379995020002020178148974022344323435-
Q ss_pred CCH----------HHHHHHHHCCCCCCCCEEEEEEECC
Q ss_conf 474----------6887730116678983599997088
Q gi|254780945|r 571 FGL----------AQLHQLRGRVGRGEEISSCILLYHP 598 (700)
Q Consensus 571 fGL----------sqLHQLRGRVGRg~~~s~c~l~~~~ 598 (700)
T Consensus 302 ~g~~~L~~~~iSkasa~QRaGRAGR~-~pG~cyRL~s~ 338 (812)
T PRK11664 302 TGLTRLETQRISQASMTQRAGRAGRL-EPGICLHLYAK 338 (812)
T ss_pred CCCCEEEEEECCHHHHHCCCCCCCCC-CCCEEEEEECH
T ss_conf 79756767704544353136767888-99707873359