HHsearch alignment for GI: 254780945 and conserved domain: PRK11776
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional.
Probab=99.95 E-value=1.5e-23 Score=204.25 Aligned_cols=332 Identities=21% Similarity=0.334 Sum_probs=232.0
Q ss_pred CCCCHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHH---HCCEEEEEHHH
Q ss_conf 8775789999863024-6798899999999984100134307886214422369999997334443---05458861279
Q gi|254780945|r 256 NVEGKIAQKILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIG 331 (700)
Q Consensus 256 ~~~~~~~~~f~~~LPF-~LT~~Q~~ai~eI~~Dl~~~~pM~RLLQGDVGSGKTiVA~~A~l~~~~~---G~Q~alMaPTE 331 (700)
T Consensus 10 ~L~~~ll~a-L~~~G~~~pTpIQ~~aIP~il~G----~--Dvi~~A~TGSGKTlAfllPil~~l~~~~~~~qaLIL~PTR 82 (459)
T PRK11776 10 PLPPALLAN-LDELGYTEMTPIQAQSLPAILAG----K--DVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTR 82 (459)
T ss_pred CCCHHHHHH-HHHCCCCCCCHHHHHHHHHHHCC----C--CEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECHH
T ss_conf 979999999-99779999998999999999779----9--8899889985899999999998411367898599996759
Q ss_pred HHHHHHHHHHHHHCCCC-CCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECHH-----HCCCCCCCCCCCEEEECCCCC
Q ss_conf 99999998621101457-865899624642256676877621347548641112-----013345544441788521013
Q gi|254780945|r 332 ILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHR 405 (700)
Q Consensus 332 ILA~QH~~~~~~~~~~~-~i~v~lLtg~~~~~er~~i~~~i~~G~~~iiIGTHA-----L~q~~v~F~~LgLvViDEQHR 405 (700)
T Consensus 83 ELa~QV~~~~~~l~~~~~~ikv~~l~GG~~~~~q---~~~L~~~-~~IvV~TPGRl~d~l~~~~l~l~~v~~lVlDEAD~ 158 (459)
T PRK11776 83 ELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQ---IGSLEHG-AHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADR 158 (459)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHH---HHHHHCC-CCEEEECCHHHHHHHHCCCCCCCCEEEEEEECCHH
T ss_conf 9999999999999850588259999899327999---9997469-99999895899988751663223103899706245
Q ss_pred C---CH-HHHHHHHHC-CCCCCCEEECHHHHHHH--HHHHHHHC-CCHHHHCCCCCCCCCCEEEEEECC--CHHHHHHHH
Q ss_conf 3---56-889987402-56776101010132278--99997520-101111023557666207999702--002689999
Q gi|254780945|r 406 F---GV-QQRLKLTQK-ATAPHVLLMTATPIPRT--LVLTSLGD-IDISKITEKPAGRKPIKTVIIPIN--RIDEVIERL 475 (700)
Q Consensus 406 F---GV-~QR~~L~~K-g~~ph~L~MtATPIPRT--Lal~~ygd-ldvS~i~e~P~gR~~I~T~~~~~~--~~~~~~~~i 475 (700)
T Consensus 159 mLd~gF~~~i~~Il~~~p~~rQ~~lfSAT~p~~i~~l~~~~l~~p~~i~-v~~~~-~~~~I~q~~~~v~~~~K~~~L~~l 236 (459)
T PRK11776 159 MLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISARFQRDPVEVK-VESTH-DDSTIEQRFYEVDPDERLPALQRL 236 (459)
T ss_pred HHCCCCHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCEEEE-ECCCC-CCCCCEEEEEEECHHHHHHHHHHH
T ss_conf 4327866889999986881302688845689899999999778989999-67877-798637999997718789999999
Q ss_pred HHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHCCCEEEEEECHHHHCCC
Q ss_conf 76310387389997120122111210146666666866371031201469989999999997559869999800341046
Q gi|254780945|r 476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555 (700)
Q Consensus 476 ~~~l~~g~q~y~VcPlIeese~~~~~~~~~~~~~l~~~~~~~v~~lHGkm~~~ek~~~m~~F~~g~~~iLvaTtviEVGv 555 (700)
T Consensus 237 l~~~-~~~~~IIFcntk--------~~v~~l~~~L~~~-g~~~~~lHg~m~q~~R~~~l~~F~~g~~~iLVaTDvaaRGI 306 (459)
T PRK11776 237 LLHY-RPESCVVFCNTK--------KECQEVADALNAQ-GFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGL 306 (459)
T ss_pred HHHC-CCCCEEEEECCH--------HHHHHHHHHHHHC-CCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCC
T ss_conf 9736-876603761748--------9999999999867-99689987999999999999999779997998810434767
Q ss_pred CCCCCCEEEEECHHHCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHC
Q ss_conf 888765899858525474688773011667898359999708889987999999998414
Q gi|254780945|r 556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE 615 (700)
Q Consensus 556 dvpna~~mvI~~aerfGLsqLHQLRGRVGRg~~~s~c~l~~~~~~~~~~~~Rl~~l~~~~ 615 (700)
T Consensus 307 Di~~V~~VInyDlP~~~e~YvHR-iGRTGRaG~~G~ait~vt~----~e~~~l~~ie~~~ 361 (459)
T PRK11776 307 DIKSLEAVINYELARDPEVHVHR-IGRTGRAGSKGLALSLVAP----EEMQRAAAIEDYL 361 (459)
T ss_pred CCCCCCEEEEECCCCCHHHHHHC-CCHHHCCCCCEEEEEEECH----HHHHHHHHHHHHH
T ss_conf 71359889997898974552020-5251378996579999868----9999999999997