HHsearch alignment for GI: 254780945 and conserved domain: PRK11776

>PRK11776 ATP-dependent RNA helicase DbpA; Provisional.
Probab=99.95  E-value=1.5e-23  Score=204.25  Aligned_cols=332  Identities=21%  Similarity=0.334  Sum_probs=232.0

Q ss_pred             CCCCHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHH---HCCEEEEEHHH
Q ss_conf             8775789999863024-6798899999999984100134307886214422369999997334443---05458861279
Q gi|254780945|r  256 NVEGKIAQKILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA---GGQAVIMAPIG  331 (700)
Q Consensus       256 ~~~~~~~~~f~~~LPF-~LT~~Q~~ai~eI~~Dl~~~~pM~RLLQGDVGSGKTiVA~~A~l~~~~~---G~Q~alMaPTE  331 (700)
T Consensus        10 ~L~~~ll~a-L~~~G~~~pTpIQ~~aIP~il~G----~--Dvi~~A~TGSGKTlAfllPil~~l~~~~~~~qaLIL~PTR   82 (459)
T PRK11776         10 PLPPALLAN-LDELGYTEMTPIQAQSLPAILAG----K--DVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTR   82 (459)
T ss_pred             CCCHHHHHH-HHHCCCCCCCHHHHHHHHHHHCC----C--CEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECHH
T ss_conf             979999999-99779999998999999999779----9--8899889985899999999998411367898599996759


Q ss_pred             HHHHHHHHHHHHHCCCC-CCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECHH-----HCCCCCCCCCCCEEEECCCCC
Q ss_conf             99999998621101457-865899624642256676877621347548641112-----013345544441788521013
Q gi|254780945|r  332 ILAQQHYEFIKKYTQNT-QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQHR  405 (700)
Q Consensus       332 ILA~QH~~~~~~~~~~~-~i~v~lLtg~~~~~er~~i~~~i~~G~~~iiIGTHA-----L~q~~v~F~~LgLvViDEQHR  405 (700)
T Consensus        83 ELa~QV~~~~~~l~~~~~~ikv~~l~GG~~~~~q---~~~L~~~-~~IvV~TPGRl~d~l~~~~l~l~~v~~lVlDEAD~  158 (459)
T PRK11776         83 ELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQ---IGSLEHG-AHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADR  158 (459)
T ss_pred             HHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHH---HHHHHCC-CCEEEECCHHHHHHHHCCCCCCCCEEEEEEECCHH
T ss_conf             9999999999999850588259999899327999---9997469-99999895899988751663223103899706245


Q ss_pred             C---CH-HHHHHHHHC-CCCCCCEEECHHHHHHH--HHHHHHHC-CCHHHHCCCCCCCCCCEEEEEECC--CHHHHHHHH
Q ss_conf             3---56-889987402-56776101010132278--99997520-101111023557666207999702--002689999
Q gi|254780945|r  406 F---GV-QQRLKLTQK-ATAPHVLLMTATPIPRT--LVLTSLGD-IDISKITEKPAGRKPIKTVIIPIN--RIDEVIERL  475 (700)
Q Consensus       406 F---GV-~QR~~L~~K-g~~ph~L~MtATPIPRT--Lal~~ygd-ldvS~i~e~P~gR~~I~T~~~~~~--~~~~~~~~i  475 (700)
T Consensus       159 mLd~gF~~~i~~Il~~~p~~rQ~~lfSAT~p~~i~~l~~~~l~~p~~i~-v~~~~-~~~~I~q~~~~v~~~~K~~~L~~l  236 (459)
T PRK11776        159 MLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISARFQRDPVEVK-VESTH-DDSTIEQRFYEVDPDERLPALQRL  236 (459)
T ss_pred             HHCCCCHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCEEEE-ECCCC-CCCCCEEEEEEECHHHHHHHHHHH
T ss_conf             4327866889999986881302688845689899999999778989999-67877-798637999997718789999999


Q ss_pred             HHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHCCCEEEEEECHHHHCCC
Q ss_conf             76310387389997120122111210146666666866371031201469989999999997559869999800341046
Q gi|254780945|r  476 KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI  555 (700)
Q Consensus       476 ~~~l~~g~q~y~VcPlIeese~~~~~~~~~~~~~l~~~~~~~v~~lHGkm~~~ek~~~m~~F~~g~~~iLvaTtviEVGv  555 (700)
T Consensus       237 l~~~-~~~~~IIFcntk--------~~v~~l~~~L~~~-g~~~~~lHg~m~q~~R~~~l~~F~~g~~~iLVaTDvaaRGI  306 (459)
T PRK11776        237 LLHY-RPESCVVFCNTK--------KECQEVADALNAQ-GFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGL  306 (459)
T ss_pred             HHHC-CCCCEEEEECCH--------HHHHHHHHHHHHC-CCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCC
T ss_conf             9736-876603761748--------9999999999867-99689987999999999999999779997998810434767


Q ss_pred             CCCCCCEEEEECHHHCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHC
Q ss_conf             888765899858525474688773011667898359999708889987999999998414
Q gi|254780945|r  556 DVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTE  615 (700)
Q Consensus       556 dvpna~~mvI~~aerfGLsqLHQLRGRVGRg~~~s~c~l~~~~~~~~~~~~Rl~~l~~~~  615 (700)
T Consensus       307 Di~~V~~VInyDlP~~~e~YvHR-iGRTGRaG~~G~ait~vt~----~e~~~l~~ie~~~  361 (459)
T PRK11776        307 DIKSLEAVINYELARDPEVHVHR-IGRTGRAGSKGLALSLVAP----EEMQRAAAIEDYL  361 (459)
T ss_pred             CCCCCCEEEEECCCCCHHHHHHC-CCHHHCCCCCEEEEEEECH----HHHHHHHHHHHHH
T ss_conf             71359889997898974552020-5251378996579999868----9999999999997