HHsearch alignment for GI: 254780945 and conserved domain: PRK12904
>PRK12904 preprotein translocase subunit SecA; Reviewed.
Probab=99.06 E-value=2.9e-08 Score=84.33 Aligned_cols=281 Identities=22% Similarity=0.252 Sum_probs=176.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 14422369999997334443054588612799999999862110145786589962464225667687762134754864
Q gi|254780945|r 301 DVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIII 380 (700)
Q Consensus 301 DVGSGKTiVA~~A~l~~~~~G~Q~alMaPTEILA~QH~~~~~~~~~~~~i~v~lLtg~~~~~er~~i~~~i~~G~~~iiI 380 (700)
T Consensus 102 ~TGEGKTL~atlp~ylnal~g~gvhvvTvNdYLA~RDa~~m~~~~~~lGltvg~i~~~~~~~~r~~aY~------~ditY 175 (833)
T PRK12904 102 KTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLYNFLGLSVGVILSGMSPEERREAYA------ADITY 175 (833)
T ss_pred ECCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHH------CCEEE
T ss_conf 068858999999999997369981998155577787799999999981978804389998399999863------77134
Q ss_pred ECHHHCCCC------------CCCCCCCEEEECCCC----------------------CCCHHHHH--------------
Q ss_conf 111201334------------554444178852101----------------------33568899--------------
Q gi|254780945|r 381 GTHALFQDS------------IQYYKLILVIVDEQH----------------------RFGVQQRL-------------- 412 (700)
Q Consensus 381 GTHAL~q~~------------v~F~~LgLvViDEQH----------------------RFGV~QR~-------------- 412 (700)
T Consensus 176 ~tn~e~gFDyLrDnm~~~~~~~v~r~~~~aivDE~DSiLiDeArtPLiisg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~ 255 (833)
T PRK12904 176 GTNNEFGFDYLRDNMVFSLEDRVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDSSELYKRANKFVPTLKKEGDYTVDE 255 (833)
T ss_pred ECCCCCCCCCCCCCCCCCHHHHHHHCCCEEEEECCHHHEEECCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEC
T ss_conf 12543245412555437889875012572688641132013267773886788777799999999999747878679951
Q ss_pred -----HHHHCC---------------------------------------------------------------------
Q ss_conf -----874025---------------------------------------------------------------------
Q gi|254780945|r 413 -----KLTQKA--------------------------------------------------------------------- 418 (700)
Q Consensus 413 -----~L~~Kg--------------------------------------------------------------------- 418 (700)
T Consensus 256 ~~~~v~lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~al~A~~l~~~d~dYiV~d~~v~ivDe~TGR~m~grr~~~Glh 335 (833)
T PRK12904 256 KSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHVNQALRAHYLFKRDVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLH 335 (833)
T ss_pred CCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCEEEEEECCCCCCCCCCCCCHHHH
T ss_conf 55775314526999998506566578432369998899999999985687079887907998667776267870654779
Q ss_pred ----------------------------CCCCCEEECHHHHHHHHHHHHHHCCCHHHHC-CCCCCCCCCEEEEEEC--CC
Q ss_conf ----------------------------6776101010132278999975201011110-2355766620799970--20
Q gi|254780945|r 419 ----------------------------TAPHVLLMTATPIPRTLVLTSLGDIDISKIT-EKPAGRKPIKTVIIPI--NR 467 (700)
Q Consensus 419 ----------------------------~~ph~L~MtATPIPRTLal~~ygdldvS~i~-e~P~gR~~I~T~~~~~--~~ 467 (700)
T Consensus 336 QaiEaKE~v~i~~e~~t~a~iT~Qn~Fr~y~klsGMTGTa~te~~Ef~~iY~l~V~~IPtn~p~~R~d~~d~iy~t~~~K 415 (833)
T PRK12904 336 QAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIYNLDVVVIPTNRPMIRIDHPDLIYKTEKEK 415 (833)
T ss_pred HHHHHHHCCCCCCCCCEEEEEEHHHHHHHCCHHCCCCCCCHHHHHHHHHHHCCCEEECCCCCCCEEEECCCCEECCHHHH
T ss_conf 99999848877888700123029889832755135677867789999998688769858999854360887020799999
Q ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 02689999763103873899971201221112101466666668663710312014699899999999975598699998
Q gi|254780945|r 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547 (700)
Q Consensus 468 ~~~~~~~i~~~l~~g~q~y~VcPlIeese~~~~~~~~~~~~~l~~~~~~~v~~lHGkm~~~ek~~~m~~F~~g~~~iLva 547 (700)
T Consensus 416 ~~ai~~ei~~~~~~gqPvLvGT~sve~SE~l---s-----~~L~~~-~i~h~vLNAk~~--~~EA~Iia~AG~~gaVTiA 484 (833)
T PRK12904 416 FDAVVEDIKERHKKGQPVLVGTTSIEKSELL---S-----KLLKKA-GIPHNVLNAKNH--EREAEIIAQAGRPGAVTIA 484 (833)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCHHHHHHH---H-----HHHHHC-CCCHHHCCCCHH--HHHHHHHHHCCCCCCEEEE
T ss_conf 9999999999997699789942747989999---9-----999873-782776177366--6688999955999976874
Q ss_pred CHHHHCCCCCCC-----------------------------------CCEEEEECHHHCCHHHH-HHHHHCCCCCCCCEE
Q ss_conf 003410468887-----------------------------------65899858525474688-773011667898359
Q gi|254780945|r 548 TTVIEVGIDVVD-----------------------------------ASIIIIENAEHFGLAQL-HQLRGRVGRGEEISS 591 (700)
Q Consensus 548 TtviEVGvdvpn-----------------------------------a~~mvI~~aerfGLsqL-HQLRGRVGRg~~~s~ 591 (700)
T Consensus 485 TNMAGRGTDI~LGGn~e~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGL~VigterhesrRiD~QLrGR~GRQGDpG~ 564 (833)
T PRK12904 485 TNMAGRGTDIKLGGNPEMLAAGLEDETEEQIAKIKAEWQKEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGS 564 (833)
T ss_pred ECCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCCC
T ss_conf 02567886821688633444432001466788888887653377886389279851433346678786122145689985
Q ss_pred EEEEECC
Q ss_conf 9997088
Q gi|254780945|r 592 CILLYHP 598 (700)
Q Consensus 592 c~l~~~~ 598 (700)
T Consensus 565 s~f~lSl 571 (833)
T PRK12904 565 SRFYLSL 571 (833)
T ss_pred CEEEEEC
T ss_conf 3265412