HHsearch alignment for GI: 254780945 and conserved domain: PRK13342
>PRK13342 recombination factor protein RarA; Reviewed.
Probab=94.92 E-value=0.13 Score=32.15 Aligned_cols=108 Identities=23% Similarity=0.282 Sum_probs=59.4
Q ss_pred HHHHHHHH---HHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf 89999999---998410013430788621442236999999733444305458861279999999986211014578658
Q gi|254780945|r 276 SQESAIKD---ILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIV 352 (700)
Q Consensus 276 ~Q~~ai~e---I~~Dl~~~~pM~RLLQGDVGSGKTiVA~~A~l~~~~~G~Q~alMaPTEILA~QH~~~~~~~~~~~~i~v 352 (700)
T Consensus 17 GQ~hllg~~~~L~~~i~~~~~~s~Il~GPPG~GKTTlA~i--------------------iA~~----~~~~f~~l--n- 69 (417)
T PRK13342 17 GQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARI--------------------IAGA----TDAEFEAL--S- 69 (417)
T ss_pred CCHHHHCCCHHHHHHHHCCCCCEEEEECCCCCCHHHHHHH--------------------HHHH----HCCCEEEE--E-
T ss_conf 9877608971999999769997599889699989999999--------------------9998----68988996--1-
Q ss_pred EEEECCCCHHHHHHHHHHHCCCCCEEEEECHHHCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHCCCCCCCEEECHH
Q ss_conf 99624642256676877621347548641112013345544441788521013356889987402567761010101
Q gi|254780945|r 353 EIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTAT 429 (700)
Q Consensus 353 ~lLtg~~~~~er~~i~~~i~~G~~~iiIGTHAL~q~~v~F~~LgLvViDEQHRFGV~QR~~L~~Kg~~ph~L~MtAT 429 (700)
T Consensus 70 ---A~~~gv~dir~ii~~a~~~~----~~-----------~~-tilfiDEIHRfnK~QQD~LLp~vE~g~iiLIgAT 127 (417)
T PRK13342 70 ---AVTSGVKDLREVIEEAKQSR----LG-----------RR-TILFIDEIHRFNKAQQDALLPHVEDGTITLIGAT 127 (417)
T ss_pred ---CCCCCHHHHHHHHHHHHHHH----CC-----------CC-EEEEEECHHHCCHHHHHHHHHHHHCCCEEEEEEC
T ss_conf ---41038899999999988631----48-----------96-5999978200588999999875112656999741