HHsearch alignment for GI: 254780945 and conserved domain: PRK13480
>PRK13480 3'-5' exoribonuclease YhaM; Provisional.
Probab=98.25 E-value=3.8e-05 Score=59.98 Aligned_cols=88 Identities=14% Similarity=0.177 Sum_probs=71.6
Q ss_pred CCHHHCCCCCEEEEEEEEEEEEEECCCCCCE-EEEEEECCCCEEEEEEECCCHHHHHHHCCCCCEEEEEEEEEECCCEEE
Q ss_conf 6478889987899999998975421589833-899998189369999951887899873289888999989973187799
Q gi|254780945|r 59 PKISEISEERIVTITGYISQHSSFQLQKRRP-YKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRII 137 (700)
Q Consensus 59 ~~I~~l~~g~~vti~g~V~~~~~~~~~~r~~-~~v~v~D~tg~i~lvfFn~~~~yl~k~lk~G~~v~vsGKv~~~~~~~q 137 (700)
T Consensus 3 ~~i~~l~~G~~v~~~~lv~~~~~~~tknG~~Yl~l~L~D~tG~I~ak~W~~~-~~~~~~~~~g~~V~v~G~v~~y~g~~Q 81 (314)
T PRK13480 3 KGIENLEVGESVDHFLLIKSATKGVASNGKPFLTLILQDKSGDIEAKLWDVS-KEDEATYVPETIVHVKGDIINYRGRKQ 81 (314)
T ss_pred CCHHHCCCCCEEEEEEEEEECHHHCCCCCCCEEEEEEECCCCEEEEEECCCC-HHHHHHCCCCCEEEEEEEEEEECCCCC
T ss_conf 5141089998888999998714331899981479999837876889967898-666863789988999999987689862
Q ss_pred EECCEEEECC
Q ss_conf 9778689626
Q gi|254780945|r 138 MVHPHYIFHN 147 (700)
Q Consensus 138 i~hPe~~~~~ 147 (700)
T Consensus 82 l~i~~i~~~~ 91 (314)
T PRK13480 82 LKVNQIRLAT 91 (314)
T ss_pred EEEEEEEECC
T ss_conf 5888857678