HHsearch alignment for GI: 254780945 and conserved domain: PRK13766
>PRK13766 Hef nuclease; Provisional.
Probab=99.93 E-value=2.2e-23 Score=203.02 Aligned_cols=312 Identities=24% Similarity=0.359 Sum_probs=195.4
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHH-HHCCEEEEEHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 679889999999998410013430788621442236999999733444-3054588612799999999862110145786
Q gi|254780945|r 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE-AGGQAVIMAPIGILAQQHYEFIKKYTQNTQI 350 (700)
Q Consensus 272 ~LT~~Q~~ai~eI~~Dl~~~~pM~RLLQGDVGSGKTiVA~~A~l~~~~-~G~Q~alMaPTEILA~QH~~~~~~~~~~~~i 350 (700)
T Consensus 15 e~R~YQ~el~~~Al~---~----NtiVvLPTG~GKT~IA~lvi~~~l~~~~gKilFLaPT~pLV~Qq~~~~~~~l~i~~~ 87 (764)
T PRK13766 15 EARLYQQLLAAKALK---G----NTLVVLPTGLGKTAIALLVIAERLQKYGGKVLILAPTKPLVEQHAEFFRKFLNIDPE 87 (764)
T ss_pred CCCHHHHHHHHHHHH---C----CEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHCCCCCC
T ss_conf 653879999999985---8----989995998668999999999999748988999858888999999999997099955
Q ss_pred EEEEEECCCCHHHHHHHHHHHCCCCCEEEEECH-----HHCCCCCCCCCCCEEEECCCCCC-C------HHHHHHHHHCC
Q ss_conf 589962464225667687762134754864111-----20133455444417885210133-5------68899874025
Q gi|254780945|r 351 IVEIITGNMPQAHRRKALERIAHGQAHIIIGTH-----ALFQDSIQYYKLILVIVDEQHRF-G------VQQRLKLTQKA 418 (700)
Q Consensus 351 ~v~lLtg~~~~~er~~i~~~i~~G~~~iiIGTH-----AL~q~~v~F~~LgLvViDEQHRF-G------V~QR~~L~~Kg 418 (700)
T Consensus 88 ~i~~ltG~~~~~~r~~~w~-----~~~Viv~TPQvl~ndL~~g~i~l~dv~lLVfDEaHha~Gnh~Y~~I~~~--y~~~~ 160 (764)
T PRK13766 88 KIVVLTGEISPEKRAALWE-----KAKVIVATPQVIENDLLAGRISLEDVSLLIFDEAHRAVGNYAYVFIAER--YHEDA 160 (764)
T ss_pred EEEEEECCCCHHHHHHHHC-----CCCEEEECCHHHHHHHHHCCCCHHHCCEEEEECCCCCCCCCCHHHHHHH--HHHCC
T ss_conf 2899988878276899860-----7999999908999999829867888228999746666677628999999--98537
Q ss_pred CCCCCEEECHHHHHHHHH--HHHHHCCCHHHHCCCCC---------CCCCCEEEEEEC-CCHHHHHHHHH----HHHCCC
Q ss_conf 677610101013227899--99752010111102355---------766620799970-20026899997----631038
Q gi|254780945|r 419 TAPHVLLMTATPIPRTLV--LTSLGDIDISKITEKPA---------GRKPIKTVIIPI-NRIDEVIERLK----VVLSEG 482 (700)
Q Consensus 419 ~~ph~L~MtATPIPRTLa--l~~ygdldvS~i~e~P~---------gR~~I~T~~~~~-~~~~~~~~~i~----~~l~~g 482 (700)
T Consensus 161 ~~PrILGLTASPGs-~~e~I~ev~~nL~i~~ie~rte~d~dv~~yv~~~~ie~i~V~l~~~~~~i~~~l~~~l~~~l~~L 239 (764)
T PRK13766 161 KNPLVLGLTASPGS-DEEKIKEVCENLGIEHVEVKTEDDPDVRPYVHKVKVEWIRVELPEELKEIRDLLNEALKDRLKKL 239 (764)
T ss_pred CCCEEEEECCCCCC-CHHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 78558850368876-44899999986598728961444434454335673279980797899999999999999999999
Q ss_pred CEEEEEECC---C-----------------------------------------------------------CCCCCC--
Q ss_conf 738999712---0-----------------------------------------------------------122111--
Q gi|254780945|r 483 KKAYWICPQ---I-----------------------------------------------------------EEKKES-- 498 (700)
Q Consensus 483 ~q~y~VcPl---I-----------------------------------------------------------eese~~-- 498 (700)
T Consensus 240 ~~~~~~~~~~~~~sk~~l~~~~~~~~~~i~~~~~~~~~~~~~~a~~~kl~~a~ell~tqg~~~~~~yl~~l~~~~~~~~~ 319 (764)
T PRK13766 240 KELGVIVSISPDVSKKELLGLQKRIQQEIARGDPEGYEAISIHAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGS 319 (764)
T ss_pred HHCCCEECCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 96697004555468999999999999988646879999999999999999999999985189999999999973013332
Q ss_pred -----------------------------------------------------CCCHHHHHHHHHHHHCCCCEECCCC--
Q ss_conf -----------------------------------------------------2101466666668663710312014--
Q gi|254780945|r 499 -----------------------------------------------------NFRSVVERFNSLHEHFTSSIAIIHG-- 523 (700)
Q Consensus 499 -----------------------------------------------------~~~~~~~~~~~l~~~~~~~v~~lHG-- 523 (700)
T Consensus 320 k~~k~l~~d~~~~~~~~~~~~~~~~hPKl~kL~eiL~~~~~~~~~sRvIIFv~~R~Ta~~L~~~L~~~-~ik~~~fVGq~ 398 (764)
T PRK13766 320 KASKRLVEDPRFKKAVRLLKELDIEHPKLEKLLEIVKEQLGKKPDSRIIVFTQYRDTAEKIVDLLNKN-GIKAIRFVGQA 398 (764)
T ss_pred HHHHHHHHCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHC-CCCCEEEEECC
T ss_conf 67899875877899999876446789379999999999972699980899927679999999998658-99722898368
Q ss_pred ------CCCHHHHHHHHHHHHCCCEEEEEECHHHHCCCCCCCCCEEEEECHHHCCHHHHHHHHHCCCCCCCCEEE-EEEE
Q ss_conf ------699899999999975598699998003410468887658998585254746887730116678983599-9970
Q gi|254780945|r 524 ------RMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC-ILLY 596 (700)
Q Consensus 524 ------km~~~ek~~~m~~F~~g~~~iLvaTtviEVGvdvpna~~mvI~~aerfGLsqLHQLRGRVGRg~~~s~c-~l~~ 596 (700)
T Consensus 399 s~~~~kGmsqkeQ~evL~~FR~Ge~NvLVATSV~EEGLDIP~cdLVI~Yd~v~S~IR~-IQR~GRTGR~r~-G~v~vLi~ 476 (764)
T PRK13766 399 SRDGDKGMSQKEQIETLDRFRAGEYNVLVATSVAEEGLDIPSVDLVIFYEPVPSEIRS-IQRKGRTGRQRG-GRVVVLIA 476 (764)
T ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCHHHCCCCCCCCCEEEEECCCCCHHHH-HHHCCCCCCCCC-CEEEEEEE
T ss_conf 9878889898999999999857998889876766448888778889993799619999-997466567789-74999995
Q ss_pred CCCCC
Q ss_conf 88899
Q gi|254780945|r 597 HPPLS 601 (700)
Q Consensus 597 ~~~~~ 601 (700)
T Consensus 477 ~gt~d 481 (764)
T PRK13766 477 KGTRD 481 (764)
T ss_pred CCCHH
T ss_conf 68626