HHsearch alignment for GI: 254780945 and conserved domain: TIGR00643
>TIGR00643 recG ATP-dependent DNA helicase RecG; InterPro: IPR004609 The ATP-dependent DNA helicase RecG 3.6.1 from EC plays a critical role in recombination and DNA repair. It helps to process Holliday junction intermediates to mature products by catalysing branch migration. RecG has DNA unwinding activity characteristic of a DNA helicase with 3' to 5' polarity.; GO: 0004003 ATP-dependent DNA helicase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=98.21 E-value=1.1e-05 Score=64.07 Aligned_cols=122 Identities=16% Similarity=0.398 Sum_probs=91.8
Q ss_pred HHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCC---CEECCCCCCCHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 8999976310387389997120122111210146666666866371---0312014699899999999975598699998
Q gi|254780945|r 471 VIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS---SIAIIHGRMSDIDKESVMDSFKNGTCKLLIA 547 (700)
Q Consensus 471 ~~~~i~~~l~~g~q~y~VcPlIeese~~~~~~~~~~~~~l~~~~~~---~v~~lHGkm~~~ek~~~m~~F~~g~~~iLva 547 (700)
T Consensus 345 A~la~l~~i~~GYQ~ALMAPT----EiL----A~QHy~~~~~~l~p~~~~vaLLTGs~k~~~r~~~~e~i~~G~~~~~vG 416 (721)
T TIGR00643 345 AALAMLAAIESGYQVALMAPT----EIL----AEQHYDSLRNLLAPLGIEVALLTGSLKGKQRKELLETIASGEIHLVVG 416 (721)
T ss_pred HHHHHHHHHHCCCEEEEECCH----HHH----HHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEH
T ss_conf 999999998469809991776----899----999999999962354857888615667878999999986395205733
Q ss_pred CH-HHHCCCCCCCCCEEEEECHHHCCHHHHHHHHHCCCCC---CCCEEEEEEECCCC
Q ss_conf 00-3410468887658998585254746887730116678---98359999708889
Q gi|254780945|r 548 TT-VIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRG---EEISSCILLYHPPL 600 (700)
Q Consensus 548 Tt-viEVGvdvpna~~mvI~~aerfGLsqLHQLRGRVGRg---~~~s~c~l~~~~~~ 600 (700)
T Consensus 417 THALiqe~vef~~L~lVIiDEQHRFGV~QR~~L~~KG~~~~~~G~~PH~L~MtATPI 473 (721)
T TIGR00643 417 THALIQEKVEFKRLGLVIIDEQHRFGVEQRKKLREKGQEGSMIGFAPHVLVMTATPI 473 (721)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC
T ss_conf 135545214431477489932335607899999986220688677777646637881