HHsearch alignment for GI: 254780945 and conserved domain: TIGR01405
>TIGR01405 polC_Gram_pos DNA polymerase III, alpha subunit, Gram-positive type; InterPro: IPR006308 These are the polypeptide chains of DNA polymerase III. Full-length homologs of this protein are restricted to the Gram-positive lineages, including the Mycoplasmas. This protein is designated alpha chain and given the gene symbol polC, but is not a full-length homolog of other polC genes. The N-terminal region of about 200 amino acids is rich in low-complexity sequence and poorly alignable. ; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0005737 cytoplasm.
Probab=92.02 E-value=1.1 Score=24.97 Aligned_cols=78 Identities=26% Similarity=0.290 Sum_probs=59.2
Q ss_pred CCCCEEEEEEEEEEEEEECCC-CCCEEEEEEECCCC--EEEEEEECC----CHHHHHHHCCCCCEEEEEEEEEEC--CCE
Q ss_conf 998789999999897542158-98338999981893--699999518----878998732898889999899731--877
Q gi|254780945|r 65 SEERIVTITGYISQHSSFQLQ-KRRPYKILLNDGTG--EITLLFFYR----KTEMLKNVFFEGRKITVTGKIKKL--KNR 135 (700)
Q Consensus 65 ~~g~~vti~g~V~~~~~~~~~-~r~~~~v~v~D~tg--~i~lvfFn~----~~~yl~k~lk~G~~v~vsGKv~~~--~~~ 135 (700)
T Consensus 5 ~~e~~~~~~G~iF~~e~~~~ksgr~~~~i~~tD~~~GGSl~~k~F~~~~~eD~~~~-~~~K~~~wv~~~g~~~~~~~~~~ 83 (1264)
T TIGR01405 5 EEENRVKVEGVIFKIEIKELKSGRTLLKIKVTDYTDGGSLILKKFLKSEKEDKEKF-DGIKIGKWVRVRGKIELDKFSRD 83 (1264)
T ss_pred CCCCEEEEEEEEEEEECCCCCCCCEEEEEEEEECCCCCEEEEEEECCCCCCHHHHH-HHHCCCCCEEEEEEEEEECCCCC
T ss_conf 35344899999863302335775279999987317886068876048997205777-34203773599998875221200
Q ss_pred EEEECCEE
Q ss_conf 99977868
Q gi|254780945|r 136 IIMVHPHY 143 (700)
Q Consensus 136 ~qi~hPe~ 143 (700)
T Consensus 84 ~~~~~~~I 91 (1264)
T TIGR01405 84 LQMIIKDI 91 (1264)
T ss_pred CEEEEECC
T ss_conf 05877502