HHsearch alignment for GI: 254780945 and conserved domain: TIGR01407
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative; InterPro: IPR006310 These are a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of Escherichia coli. .
Probab=97.80 E-value=0.00058 Score=50.65 Aligned_cols=155 Identities=18% Similarity=0.214 Sum_probs=113.7
Q ss_pred CCCCCCCHHHHHHHHHCCCC------------CCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHH-
Q ss_conf 76787757899998630246------------79889999999998410013430788621442236999999733444-
Q gi|254780945|r 253 IPINVEGKIAQKILRNIPFS------------PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVE- 319 (700)
Q Consensus 253 ~~~~~~~~~~~~f~~~LPF~------------LT~~Q~~ai~eI~~Dl~~~~pM~RLLQGDVGSGKTiVA~~A~l~~~~- 319 (700)
T Consensus 229 ~~~~~l~~~fsk~~~~l~l~GGslskaf~~y~~R~~Q~~la~~v~~~l~~Gt~~~~lIEA~tG~GKtlgYLLPal~~~~~ 308 (944)
T TIGR01407 229 TEYQTLTSTFSKNIDRLGLEGGSLSKAFLRYEYREEQLKLAELVEDELTHGTEEKSLIEAPTGTGKTLGYLLPALYLAKE 308 (944)
T ss_pred CCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 32200014677788763167623788877653138899999999998415766113302376643258999999973137
Q ss_pred HHCCEEEEEHHHHHHHHHHHHHHHHCCC---CCCEEEEEECC-------------------------------------C
Q ss_conf 3054588612799999999862110145---78658996246-------------------------------------4
Q gi|254780945|r 320 AGGQAVIMAPIGILAQQHYEFIKKYTQN---TQIIVEIITGN-------------------------------------M 359 (700)
Q Consensus 320 ~G~Q~alMaPTEILA~QH~~~~~~~~~~---~~i~v~lLtg~-------------------------------------~ 359 (700)
T Consensus 309 ~~~~vviST~Tk~LQ~QL~E~d~P~l~~~~~fk~~~~~iKg~~~YlsL~~F~~~L~~~Cet~~~~~~~~KM~~LvWLTET 388 (944)
T TIGR01407 309 EEKPVVISTATKVLQSQLLEKDIPLLNKILNFKLNVALIKGKKNYLSLQKFSQLLKENCETDNKEFELFKMQVLVWLTET 388 (944)
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHEEEECC
T ss_conf 88856998363665656568888988865189712788507655436789999960478882489999987543210037
Q ss_pred CHHHH--------------------------------HHHHHHH--CCCCCEEEEECHHHC-CCCCC----CCCCCEEEE
Q ss_conf 22566--------------------------------7687762--134754864111201-33455----444417885
Q gi|254780945|r 360 PQAHR--------------------------------RKALERI--AHGQAHIIIGTHALF-QDSIQ----YYKLILVIV 400 (700)
Q Consensus 360 ~~~er--------------------------------~~i~~~i--~~G~~~iiIGTHAL~-q~~v~----F~~LgLvVi 400 (700)
T Consensus 389 etGDldEl~l~~~~~~f~~~~~~dG~~~l~~~~~~~~~dF~~~~~~~A~~~~~~itNHA~L~~~~~~~~~~~~~~~~lii 468 (944)
T TIGR01407 389 ETGDLDELNLLTGNKSFFAEVRHDGLGFLSKKDLFYEVDFYKRAQKKAEQAEILITNHAYLITRLVDKPELLPEFRLLII 468 (944)
T ss_pred CCCCHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHCCCCCCCCCCEEE
T ss_conf 98756752024675035778856056445665521128899999988833634565017887777644777766773252
Q ss_pred CCCCCCC
Q ss_conf 2101335
Q gi|254780945|r 401 DEQHRFG 407 (700)
Q Consensus 401 DEQHRFG 407 (700)
T Consensus 469 DEAh~l~ 475 (944)
T TIGR01407 469 DEAHHLP 475 (944)
T ss_pred HHHHHHH
T ss_conf 2265379