HHsearch alignment for GI: 254780945 and conserved domain: TIGR01587
>TIGR01587 cas3_core CRISPR-associated helicase Cas3; InterPro: IPR006474 This entry represents a highly conserved core region of the Cas3 sequences. The proteins are found in association with CRISPR repeat elements in a broad range of bacteria and Archaea . Cas3 appears to be a helicase, containing a DEAD/DEAH box region and conserved C-terminal domain. Some but not all members have an N-terminal HD domain region (IPR006674 from INTERPRO), these sequences are not included within this group..
Probab=99.44 E-value=2.6e-12 Score=116.12 Aligned_cols=288 Identities=24% Similarity=0.335 Sum_probs=191.9
Q ss_pred EEEECCCCCHHHHHHHHHHH---HHHHH--CCEEEEEHHHHHHHHHHHHHHH----HCCCCCCEEEEEEC------CCCH
Q ss_conf 88621442236999999733---44430--5458861279999999986211----01457865899624------6422
Q gi|254780945|r 297 ILQGDVGSGKTLVALIAMAA---AVEAG--GQAVIMAPIGILAQQHYEFIKK----YTQNTQIIVEIITG------NMPQ 361 (700)
Q Consensus 297 LLQGDVGSGKTiVA~~A~l~---~~~~G--~Q~alMaPTEILA~QH~~~~~~----~~~~~~i~v~lLtg------~~~~ 361 (700)
T Consensus 3 v~~APTG~GKTe~aL~~A~~sah~~k~~~~~~~I~alP~r~~~na~~~r~~~sash~Fg~P~-~~~~~~ssrfnh~~~~i 81 (424)
T TIGR01587 3 VIEAPTGYGKTEAALLWALKSAHLIKKQKADKVIFALPTRVTINAMYRRLKESASHLFGSPE-LVLLLHSSRFNHLASSI 81 (424)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHHHHHHHHHHCCCCC-CCCCCCCCHHHHHHHHH
T ss_conf 88617899878999999986366642244401012202688899999999986775417854-32334552267899999
Q ss_pred HHH-----------HHHHHHHCCCCC-----EEEEEC--HHHCCC------CCCCC-------CCCEEEECCCCCCCHHH
Q ss_conf 566-----------768776213475-----486411--120133------45544-------44178852101335688
Q gi|254780945|r 362 AHR-----------RKALERIAHGQA-----HIIIGT--HALFQD------SIQYY-------KLILVIVDEQHRFGVQQ 410 (700)
Q Consensus 362 ~er-----------~~i~~~i~~G~~-----~iiIGT--HAL~q~------~v~F~-------~LgLvViDEQHRFGV~Q 410 (700)
T Consensus 82 k~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~pi~~~T~d~~~~~~~~~ssGs~~~~~~~~~~~~~S~~i~DE~h~y~~~~ 161 (424)
T TIGR01587 82 KLRKIKEKGDSEELEKLVKLYIHSNKKLFLKPITVCTIDQVLKSVFGESSGSFGHYEITLASIANSLIIFDEVHAYEEYT 161 (424)
T ss_pred HHHHHHCCCCHHHHHHHHHHHCCCCHHEEECCCCCCCHHHHHEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98776304782799999985224212101317885341220000005534452056888877776765625367776425
Q ss_pred HHH-HH-----HC-CCCCCCEEECHHHHHHH---HHHHHHHCCCHHHHCCCCCCCCCCE---------------------
Q ss_conf 998-74-----02-56776101010132278---9999752010111102355766620---------------------
Q gi|254780945|r 411 RLK-LT-----QK-ATAPHVLLMTATPIPRT---LVLTSLGDIDISKITEKPAGRKPIK--------------------- 459 (700)
Q Consensus 411 R~~-L~-----~K-g~~ph~L~MtATPIPRT---Lal~~ygdldvS~i~e~P~gR~~I~--------------------- 459 (700)
T Consensus 162 ~~~~~l~~L~~~~~~~~~~~~lMsAT-lP~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~GvnGaqrfdllahPe~~~~r~ 239 (424)
T TIGR01587 162 LALTILAALEVLKIDNDVKILLMSAT-LPRELKKFLKEYLEKIEYVEENELLD-LKEVEGVNGAQRFDLLAHPEFKEKRF 239 (424)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEECC-CCHHHHHHHHHHHHCCCCCCCCCCCC-CCCCCCCCCHHHHHHHCCCHHHHHHH
T ss_conf 55569999999998738988998405-67578999998731047633335578-66435464202333321720210022
Q ss_pred ---EEEEECC---CHHHHHHHH-HHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCC--CEECCCCCCCHH--
Q ss_conf ---7999702---002689999-76310387389997120122111210146666666866371--031201469989--
Q gi|254780945|r 460 ---TVIIPIN---RIDEVIERL-KVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTS--SIAIIHGRMSDI-- 528 (700)
Q Consensus 460 ---T~~~~~~---~~~~~~~~i-~~~l~~g~q~y~VcPlIeese~~~~~~~~~~~~~l~~~~~~--~v~~lHGkm~~~-- 528 (700)
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~NtV--------~~A~~~Y~~~kE~~p~~~~~~L~HsRF~~~DR 311 (424)
T TIGR01587 240 ENHRISLIEKDKVGEISSLERLLLEELKKGGKVLIIVNTV--------DRAQEFYQKLKEKAPELEEVILLHSRFTEKDR 311 (424)
T ss_pred HCCCCCHHHHHCCCCHHHHHHHHHHHCCCCCCEEEEEECH--------HHHHHHHHHHHHCCCCCCCEEEEECCCCHHHH
T ss_conf 1576421343203313466667787415778669998543--------89999999985126520021244044770036
Q ss_pred -HHH---HHHHHHHC-----CCEEEEEECHHHHCCCCCCCCCEEEEECHHHCCHHHHHHHHHCCCC-CCCCE-----EEE
Q ss_conf -999---99999755-----9869999800341046888765899858525474688773011667-89835-----999
Q gi|254780945|r 529 -DKE---SVMDSFKN-----GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGR-GEEIS-----SCI 593 (700)
Q Consensus 529 -ek~---~~m~~F~~-----g~~~iLvaTtviEVGvdvpna~~mvI~~aerfGLsqLHQLRGRVGR-g~~~s-----~c~ 593 (700)
T Consensus 312 ~~KEde~~~l~e~~~S~~~~~~~~v~V~TQv~E~SlD~-s~D~~iTe~a---P~d~LiQR~GR~~R~~~~~~d~~~~~~y 387 (424)
T TIGR01587 312 AKKEDEAELLKELKKSAWKDNEKFVIVATQVIEVSLDI-SVDVMITELA---PIDSLIQRLGRLNRYGRKIGDIENREVY 387 (424)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEEEEC-CCCHHHHHCC---CHHHHHHHHHHHCCCCCCCCCCCCCCEE
T ss_conf 67767999999851013544577069987878886420-4441343115---0123355421110113565788987203
Q ss_pred EEECCC
Q ss_conf 970888
Q gi|254780945|r 594 LLYHPP 599 (700)
Q Consensus 594 l~~~~~ 599 (700)
T Consensus 388 ~~~~~~ 393 (424)
T TIGR01587 388 ILTILL 393 (424)
T ss_pred EEEECC
T ss_conf 785257