HHsearch alignment for GI: 254780945 and conserved domain: TIGR02621
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype; InterPro: IPR013444 This entry represents a CRISPR-associated putative DEAH-box helicase, or Cas3, subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. The proteins include both DEAH and HD motifs..
Probab=95.62 E-value=0.013 Score=39.98 Aligned_cols=282 Identities=21% Similarity=0.256 Sum_probs=164.7
Q ss_pred CCCCHH-HHHHHHHHHHHHHHCCE-----EEEEHHHHH--------HHHH---HHHHHHHCCCC----------------
Q ss_conf 442236-99999973344430545-----886127999--------9999---98621101457----------------
Q gi|254780945|r 302 VGSGKT-LVALIAMAAAVEAGGQA-----VIMAPIGIL--------AQQH---YEFIKKYTQNT---------------- 348 (700)
Q Consensus 302 VGSGKT-iVA~~A~l~~~~~G~Q~-----alMaPTEIL--------A~QH---~~~~~~~~~~~---------------- 348 (700)
T Consensus 41 Tg~GKTlavi~~WlyAl~~~a~~~Grrr~~~~vP~RL~yvVdRR~vVD~~te~a~~i~~aL~~~pe~~Av~~vl~slr~~ 120 (975)
T TIGR02621 41 TGLGKTLAVIAVWLYALAIDAEQVGRRRRRRKVPRRLVYVVDRRTVVDQSTEEAEKIREALGEAPELPAVRYVLESLRSA 120 (975)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCEEEEEEECCEEECCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCC
T ss_conf 53236899999999998740003673242133683137887142453432789999998546888778999999973236
Q ss_pred --------CCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEEC-----HHHCCC--CCCCC----------CCCEEEECCC
Q ss_conf --------8658996246422566768776213475486411-----120133--45544----------4417885210
Q gi|254780945|r 349 --------QIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT-----HALFQD--SIQYY----------KLILVIVDEQ 403 (700)
Q Consensus 349 --------~i~v~lLtg~~~~~er~~i~~~i~~G~~~iiIGT-----HAL~q~--~v~F~----------~LgLvViDEQ 403 (700)
T Consensus 121 ~~~Pa~a~pl~v~~LRGg~ad~~rDltew~~~P~rPavivgTvDm~gSRLLFrGYg~spk~rpihAal~G~DAl~VlDEA 200 (975)
T TIGR02621 121 FAIPAEAEPLAVSTLRGGFADNDRDLTEWTRDPSRPAVIVGTVDMIGSRLLFRGYGCSPKSRPIHAALLGQDALIVLDEA 200 (975)
T ss_pred CCCCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHCCCCCCCCCCHHHHHHHCHHHHHHHHH
T ss_conf 78776566523311167553022323345317899669983442023435441345676655112221311066543343
Q ss_pred CCCCHHHHH-------HHHHCCC-CCCCEEECHHHHHH---HHHHHHHHCCCHHHHC-----------CCCCCCCCCEEE
Q ss_conf 133568899-------8740256-77610101013227---8999975201011110-----------235576662079
Q gi|254780945|r 404 HRFGVQQRL-------KLTQKAT-APHVLLMTATPIPR---TLVLTSLGDIDISKIT-----------EKPAGRKPIKTV 461 (700)
Q Consensus 404 HRFGV~QR~-------~L~~Kg~-~ph~L~MtATPIPR---TLal~~ygdldvS~i~-----------e~P~gR~~I~T~ 461 (700)
T Consensus 201 Hl~~~f~e~L~~i~~E~~R~~d~~~~~V~~Ltatp~td~p~~~~~l~~~d~~~~~~~~rL~~kk~~~L~p~~de~~~~~~ 280 (975)
T TIGR02621 201 HLSPAFQETLKQIRSEQQRLEDFLPLRVVELTATPRTDTPDTLTLLSAEDYKHPVLKKRLDAKKEVKLDPQSDEKRLSED 280 (975)
T ss_pred HCCHHHHHHHHHHHHHCCCHHHCCCCEECCEEEECCCCCCCCCCCCCCCCCCCCHHHCCHHHHCCCCCCCCHHHHHHHHH
T ss_conf 05878999999985110470122686203136630147886542235510103133204341202104782689998851
Q ss_pred EEECC----C-------HHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEECCCCCCCHHHH
Q ss_conf 99702----0-------026899997631038738999712012211121014666666686637103120146998999
Q gi|254780945|r 462 IIPIN----R-------IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDK 530 (700)
Q Consensus 462 ~~~~~----~-------~~~~~~~i~~~l~~g~q~y~VcPlIeese~~~~~~~~~~~~~l~~~~~~~v~~lHGkm~~~ek 530 (700)
T Consensus 281 v~~~~~~~~DGkaaaalteqaWsra-kels~g~~~~Vf~~~~--------~~v~~v~a~L~k~~~~-~~~ltG~vr~~~~ 350 (975)
T TIGR02621 281 VKELDLKMKDGKAAAALTEQAWSRA-KELSSGEAILVFCNTV--------DEVKKVVAKLPKEARR-LEDLTGTVRGLER 350 (975)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHH-HHHCCCCEEEEEECCC--------CHHHHHHHHCCCCCCC-HHHHCCCCCCCCC
T ss_conf 1355422003056788777776665-5412786699987684--------3068988645774540-7762881043347
Q ss_pred H------HHHHHHHC-----------CCEEEEEECHHHHCCCCCCCCCEEEEECHHHCCHHHHHHHHHCCCCCCCCEEE-
Q ss_conf 9------99999755-----------98699998003410468887658998585254746887730116678983599-
Q gi|254780945|r 531 E------SVMDSFKN-----------GTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSC- 592 (700)
Q Consensus 531 ~------~~m~~F~~-----------g~~~iLvaTtviEVGvdvpna~~mvI~~aerfGLsqLHQLRGRVGRg~~~s~c- 592 (700)
T Consensus 351 d~lar~~~~~~~~Lpp~~~~s~g~~~~g~~~vVaTst~EVGadl-dfdhLvt~~~~-~~--sl~QRfGRvnR~G~r~~~~ 426 (975)
T TIGR02621 351 DMLARRGEIFNRFLPPYRSGSEGRPQQGTVYVVATSTGEVGADL-DFDHLVTDLAP-FE--SLVQRFGRVNRFGERLDGS 426 (975)
T ss_pred CCCCCCCCHHHHCCCCCCCCCCCCCCCCCEEEEEECCEEECCCC-CCCHHHHCCCH-HH--HHHHHHHHHCCCCCCCCCE
T ss_conf 85200131453148764567736689987799973242550344-31112211442-45--7865430020002231650
Q ss_pred -EEEEC
Q ss_conf -99708
Q gi|254780945|r 593 -ILLYH 597 (700)
Q Consensus 593 -~l~~~ 597 (700)
T Consensus 427 ~~iVh~ 432 (975)
T TIGR02621 427 IAIVHS 432 (975)
T ss_pred EEEEEC
T ss_conf 589856