HHsearch alignment for GI: 254780945 and conserved domain: cd00046
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.65 E-value=3.1e-15 Score=139.11 Aligned_cols=131 Identities=33% Similarity=0.493 Sum_probs=107.7
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHH--HHCCEEEEEHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHC
Q ss_conf 0788621442236999999733444--30545886127999999998621101457865899624642256676877621
Q gi|254780945|r 295 LRILQGDVGSGKTLVALIAMAAAVE--AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372 (700)
Q Consensus 295 ~RLLQGDVGSGKTiVA~~A~l~~~~--~G~Q~alMaPTEILA~QH~~~~~~~~~~~~i~v~lLtg~~~~~er~~i~~~i~ 372 (700)
T Consensus 2 ~~lv~~ptGsGKT~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~ 76 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQE----KLL 76 (144)
T ss_pred CEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHCCC-CCEEEEEECCCCHHHHH----HHH
T ss_conf 9999889971799999999999997568976999746799999999999997488-71799996136367789----874
Q ss_pred CCCCEEEEECHHHC-----CCCCCCCCCCEEEECCCCC-----CCHHHHHHHHHCCCCCCCEEECHHH
Q ss_conf 34754864111201-----3345544441788521013-----3568899874025677610101013
Q gi|254780945|r 373 HGQAHIIIGTHALF-----QDSIQYYKLILVIVDEQHR-----FGVQQRLKLTQKATAPHVLLMTATP 430 (700)
Q Consensus 373 ~G~~~iiIGTHAL~-----q~~v~F~~LgLvViDEQHR-----FGV~QR~~L~~Kg~~ph~L~MtATP 430 (700)
T Consensus 77 ~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~~~~~~~~~~~~l~lSATp 144 (144)
T cd00046 77 SGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred CCCCCEEECCHHHHHHHHHCCCCCCCCCCEEEEECHHHHHCCCCHHHHHHHHHHCCCCCCEEEECCCC
T ss_conf 58984998288999999973876555100999988887643796999999999679999489982899