HHsearch alignment for GI: 254780945 and conserved domain: cd00079

>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process.
Probab=99.71  E-value=2.9e-16  Score=147.16  Aligned_cols=129  Identities=31%  Similarity=0.505  Sum_probs=110.4

Q ss_pred             CCEEEEEE--CCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHH
Q ss_conf             62079997--0200268999976310387389997120122111210146666666866371031201469989999999
Q gi|254780945|r  457 PIKTVIIP--INRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVM  534 (700)
Q Consensus       457 ~I~T~~~~--~~~~~~~~~~i~~~l~~g~q~y~VcPlIeese~~~~~~~~~~~~~l~~~~~~~v~~lHGkm~~~ek~~~m  534 (700)
T Consensus         1 ~~~~~~~~~~~~K~~~l~~~i~~~~~~~~kviIF~~~~~--------~~~~l~~~L~~-~~~~~~~~~~~~~~~~R~~~~   71 (131)
T cd00079           1 PIKQYVLPVEDEKLEALLELLKEHLKKGGKVLIFCPSKK--------MLDELAELLRK-PGIKVAALHGDGSQEEREEVL   71 (131)
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEECCHH--------HHHHHHHHHHH-CCCCEEEEECCCCHHHHHHHH
T ss_conf             922899938669999999999999978990999978899--------99999999955-899899998999999999999


Q ss_pred             HHHHCCCEEEEEECHHHHCCCCCCCCCEEEEECHHHCCHHHHHHHHHCCCCCCCCEEEEEE
Q ss_conf             9975598699998003410468887658998585254746887730116678983599997
Q gi|254780945|r  535 DSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGEEISSCILL  595 (700)
Q Consensus       535 ~~F~~g~~~iLvaTtviEVGvdvpna~~mvI~~aerfGLsqLHQLRGRVGRg~~~s~c~l~  595 (700)
T Consensus        72 ~~F~~~~~~ilv~t~~~~~Gldl~~~~~vI~~~~~-~s~~~~~Q~~GR~~R~gq~~~~~~~  131 (131)
T cd00079          72 KDFREGEIVVLVATDVIARGIDLPNVSVVINYDLP-WSPSSYLQRIGRAGRAGQKGTAILL  131 (131)
T ss_pred             HHHHHHCEEEEEEEECCEECCCCCCCCEEEEECCC-CCHHHHHHHHHCCCCCCCCEEEEEC
T ss_conf             99775401048875112003661028799997899-6989999897216708996379979