HHsearch alignment for GI: 254780945 and conserved domain: cd00079
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process.
Probab=96.96 E-value=0.0059 Score=42.75 Aligned_cols=85 Identities=18% Similarity=0.347 Sum_probs=70.0
Q ss_pred HHHHHHHCCEEEEEHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECHHHCCCCCCCCC
Q ss_conf 33444305458861279999999986211014578658996246422566768776213475486411120133455444
Q gi|254780945|r 315 AAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYK 394 (700)
Q Consensus 315 l~~~~~G~Q~alMaPTEILA~QH~~~~~~~~~~~~i~v~lLtg~~~~~er~~i~~~i~~G~~~iiIGTHAL~q~~v~F~~ 394 (700)
T Consensus 22 ~~~~~~~~kviIF~~~~~~~~~----l~~~L~~~~~~~~~~~~~~~~~~R~~~~~~F~~~~~~ilv~t~~-~~~Gldl~~ 96 (131)
T cd00079 22 KEHLKKGGKVLIFCPSKKMLDE----LAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDV-IARGIDLPN 96 (131)
T ss_pred HHHHHCCCEEEEEECCHHHHHH----HHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCEEEEEEEEC-CEECCCCCC
T ss_conf 9999789909999788999999----99999558998999989999999999999977540104887511-200366102
Q ss_pred CCEEEECCCC
Q ss_conf 4178852101
Q gi|254780945|r 395 LILVIVDEQH 404 (700)
Q Consensus 395 LgLvViDEQH 404 (700)
T Consensus 97 ~~~vI~~~~~ 106 (131)
T cd00079 97 VSVVINYDLP 106 (131)
T ss_pred CCEEEEECCC
T ss_conf 8799997899