HHsearch alignment for GI: 254780945 and conserved domain: cd00268

>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=92.68  E-value=0.68  Score=26.61  Aligned_cols=111  Identities=17%  Similarity=0.305  Sum_probs=71.2

Q ss_pred             CCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHCCCEEEEEECH------HHHC
Q ss_conf             0387389997120122111210146666666866371031201469989999999997559869999800------3410
Q gi|254780945|r  480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT------VIEV  553 (700)
Q Consensus       480 ~~g~q~y~VcPlIeese~~~~~~~~~~~~~l~~~~~~~v~~lHGkm~~~ek~~~m~~F~~g~~~iLvaTt------viEV  553 (700)
T Consensus        67 ~~~~~alil~PTrELa~-----Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l---~~-~~~IlI~TPgrl~~~l~~~  137 (203)
T cd00268          67 KDGPQALILAPTRELAL-----QIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKL---KR-GPHIVVATPGRLLDLLERG  137 (203)
T ss_pred             CCCCEEEEEECCHHHHH-----HHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHH---HC-CCEEEEECCHHHHHHHHCC
T ss_conf             68966999968799999-----999999985057983899983898879999998---53-8759996818999999848


Q ss_pred             CCCCCCCCEEEEECHHHC---C-HHHHHHHHHCCCCCCCCEEEEEEECCCCCHH
Q ss_conf             468887658998585254---7-4688773011667898359999708889987
Q gi|254780945|r  554 GIDVVDASIIIIENAEHF---G-LAQLHQLRGRVGRGEEISSCILLYHPPLSKN  603 (700)
Q Consensus       554 Gvdvpna~~mvI~~aerf---G-LsqLHQLRGRVGRg~~~s~c~l~~~~~~~~~  603 (700)
T Consensus       138 ~~~l~~l~~lVlDEAD~ll~~gf~~~i~~I~~~l~~~---~Q~~-lfSAT~~~~  187 (203)
T cd00268         138 KLDLSKVKYLVLDEADRMLDMGFEDQIREILKLLPKD---RQTL-LFSATMPKE  187 (203)
T ss_pred             CCCCCCCCEEEEECHHHHHHCCCHHHHHHHHHHCCCC---CEEE-EEEECCCHH
T ss_conf             8651322489998588887477699999999858967---7799-998049988