HHsearch alignment for GI: 254780945 and conserved domain: cd00268
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=92.68 E-value=0.68 Score=26.61 Aligned_cols=111 Identities=17% Similarity=0.305 Sum_probs=71.2
Q ss_pred CCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHCCCEEEEEECH------HHHC
Q ss_conf 0387389997120122111210146666666866371031201469989999999997559869999800------3410
Q gi|254780945|r 480 SEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATT------VIEV 553 (700)
Q Consensus 480 ~~g~q~y~VcPlIeese~~~~~~~~~~~~~l~~~~~~~v~~lHGkm~~~ek~~~m~~F~~g~~~iLvaTt------viEV 553 (700)
T Consensus 67 ~~~~~alil~PTrELa~-----Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l---~~-~~~IlI~TPgrl~~~l~~~ 137 (203)
T cd00268 67 KDGPQALILAPTRELAL-----QIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKL---KR-GPHIVVATPGRLLDLLERG 137 (203)
T ss_pred CCCCEEEEEECCHHHHH-----HHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHH---HC-CCEEEEECCHHHHHHHHCC
T ss_conf 68966999968799999-----999999985057983899983898879999998---53-8759996818999999848
Q ss_pred CCCCCCCCEEEEECHHHC---C-HHHHHHHHHCCCCCCCCEEEEEEECCCCCHH
Q ss_conf 468887658998585254---7-4688773011667898359999708889987
Q gi|254780945|r 554 GIDVVDASIIIIENAEHF---G-LAQLHQLRGRVGRGEEISSCILLYHPPLSKN 603 (700)
Q Consensus 554 Gvdvpna~~mvI~~aerf---G-LsqLHQLRGRVGRg~~~s~c~l~~~~~~~~~ 603 (700)
T Consensus 138 ~~~l~~l~~lVlDEAD~ll~~gf~~~i~~I~~~l~~~---~Q~~-lfSAT~~~~ 187 (203)
T cd00268 138 KLDLSKVKYLVLDEADRMLDMGFEDQIREILKLLPKD---RQTL-LFSATMPKE 187 (203)
T ss_pred CCCCCCCCEEEEECHHHHHHCCCHHHHHHHHHHCCCC---CEEE-EEEECCCHH
T ss_conf 8651322489998588887477699999999858967---7799-998049988