HHsearch alignment for GI: 254780945 and conserved domain: cd01701
>cd01701 Pol_zeta Pol_zeta, a member of the Y-family of DNA polymerases. Y-family polymerases can transverse normal replication-blocking DNA lesions, such as cyclobutane pyrimidine dimers resulting from UV damage, at higher error rate. The Y-family has no 3'-5' exonuclease activity. Pol zeta has also been named Rev1; this subfamily is mainly present in eukaryotes.
Probab=95.79 E-value=0.0064 Score=42.48 Aligned_cols=15 Identities=33% Similarity=0.330 Sum_probs=9.1
Q ss_pred CCCCCHHHHHHHHHC
Q ss_conf 013356889987402
Q gi|254780945|r 403 QHRFGVQQRLKLTQK 417 (700)
Q Consensus 403 QHRFGV~QR~~L~~K 417 (700)
T Consensus 261 ~~~fG~k~G~~l~~~ 275 (405)
T cd01701 261 QKVFGKKTGEKLYNY 275 (405)
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999778999999999