HHsearch alignment for GI: 254780945 and conserved domain: cd03769
>cd03769 SR_IS607_transposase_like Serine Recombinase (SR) family, IS607-like transposase subfamily, catalytic domain; members contain a DNA binding domain with homology to MerR/SoxR located N-terminal to the catalytic domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. This subfamily is composed of proteins that catalyze the transposition of insertion sequence (IS) elements such as IS607 from Helicobacter and IS1535 from Mycobacterium, and similar proteins from other bacteria and several archaeal species. IS elements are DNA segments that move to new sites in prokaryotic and eukaryotic genomes causing insertion mutations and gene rearrangements.
Probab=90.16 E-value=1.6 Score=23.68 Aligned_cols=93 Identities=16% Similarity=0.224 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHH--HHHHHHHHHHHHC-CEEEEEHHHHHHHHHHHHHHHHCCCCCCE
Q ss_conf 88999999999841001343078862144223699--9999733444305-45886127999999998621101457865
Q gi|254780945|r 275 KSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLV--ALIAMAAAVEAGG-QAVIMAPIGILAQQHYEFIKKYTQNTQII 351 (700)
Q Consensus 275 ~~Q~~ai~eI~~Dl~~~~pM~RLLQGDVGSGKTiV--A~~A~l~~~~~G~-Q~alMaPTEILA~QH~~~~~~~~~~~~i~ 351 (700)
T Consensus 17 ~~Q~~~l~~~~~~~--g~--~~~i~~D~gSG~~~~Rp~l~~Ll~~~~~g~v~~vvV~~~DRL~Rfg~elle~~~~~~gv~ 92 (134)
T cd03769 17 ERQIERLEAYATAQ--GW--IVEVIKDIGSGLNEKRKGLLKLLEDVLAGKVERVVITYKDRLARFGFELLEELFKAYGVE 92 (134)
T ss_pred HHHHHHHHHHHHHC--CC--EEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCE
T ss_conf 99999999999955--98--259998567776603589999999997389878999855577876899999999986988
Q ss_pred EEEEECCCCHHHHHHHHHHH
Q ss_conf 89962464225667687762
Q gi|254780945|r 352 VEIITGNMPQAHRRKALERI 371 (700)
Q Consensus 352 v~lLtg~~~~~er~~i~~~i 371 (700)
T Consensus 93 iivin~~~~~~~~~EL~eDl 112 (134)
T cd03769 93 IVVINQEENEELEQELVEDL 112 (134)
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99997998998689999999