HHsearch alignment for GI: 254780945 and conserved domain: cd04490
>cd04490 PolII_SU_OBF PolII_SU_OBF: A subfamily of OB folds corresponding to the OB fold found in Pyrococcus abyssi DNA polymerase II (PolII) small subunit. PolII is a family D DNA polymerase, having a 3-prime to 5-prime exonuclease activity. P. abyssi PolII is heterodimeric. The large subunit appears to be the polymerase, and the small subunit may be the exonuclease. The small subunit contains a calcineurin-like phosphatase superfamily domain C-terminal to this OB-fold domain.
Probab=95.31 E-value=0.19 Score=30.99 Aligned_cols=71 Identities=28% Similarity=0.374 Sum_probs=49.9
Q ss_pred EEEEEEEEEEEEEECCCCCCEEEEEEECCCCEEEEEEECCCHHHH--HHHCCCCCEEEEEEEEEECCCEE---EEECCE
Q ss_conf 899999998975421589833899998189369999951887899--87328988899998997318779---997786
Q gi|254780945|r 69 IVTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEML--KNVFFEGRKITVTGKIKKLKNRI---IMVHPH 142 (700)
Q Consensus 69 ~vti~g~V~~~~~~~~~~r~~~~v~v~D~tg~i~lvfFn~~~~yl--~k~lk~G~~v~vsGKv~~~~~~~---qi~hPe 142 (700)
T Consensus 1 ev~iIGmV~d~r~---TknG~~~~~lED~TG~i~vl~~kd~~~~~~~~~~ll~DeVIGV~G~~s~~g~~~f~~~i~~Pd 76 (79)
T cd04490 1 EVSIIGMVNDVRS---TKNGHRIVELEDTTGRITVLLTKDKEELFEEAEDILPDEVIGVSGTVSKDGGLIFADEIFRPD 76 (79)
T ss_pred CEEEEEEECCCEE---CCCCCEEEEEECCCCEEEEEEECCCHHHHHHHHCCCCCCEEEEEEEECCCCCEEEEECCCCCC
T ss_conf 9699999933276---168878999987999899999689367756675256887899999987899889997124699