HHsearch alignment for GI: 254780945 and conserved domain: cd04492
>cd04492 YhaM_OBF_like YhaM_OBF_like: A subfamily of OB folds similar to that found in Bacillus subtilis YhaM and Staphylococcus aureus cmp-binding factor-1 (SaCBF1). Both these proteins are 3'-to-5'exoribonucleases. YhaM requires Mn2+ or Co2+ for activity and is inactive in the presence of Mg2+. YhaM also has a Mn2+ dependent 3'-to-5'single-stranded DNA exonuclease activity. SaCBF is also a double-stranded DNA binding protein, binding specifically to cmp, the replication enhancer found in S. aureus plasmid pT181. Proteins in this group combine an N-terminal OB fold with a C-terminal HD domain. The HD domain is found in metal-dependent phosphohydrolases.
Probab=97.08 E-value=0.0069 Score=42.21 Aligned_cols=70 Identities=17% Similarity=0.252 Sum_probs=54.0
Q ss_pred EEEEECCCCCC-EEEEEEECCCCEEEEEEECCCHHHHHHHCCCCCEEEEEEEEEECCCEEEEECCEEEECCC
Q ss_conf 97542158983-389999818936999995188789987328988899998997318779997786896264
Q gi|254780945|r 78 QHSSFQLQKRR-PYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNRIIMVHPHYIFHNS 148 (700)
Q Consensus 78 ~~~~~~~~~r~-~~~v~v~D~tg~i~lvfFn~~~~yl~k~lk~G~~v~vsGKv~~~~~~~qi~hPe~~~~~~ 148 (700)
T Consensus 8 ~~~~~~tk~G~~Yl~l~L~D~tG~I~ak~W~~~-~~~~~~~~~g~~V~v~G~v~~y~g~~Ql~I~~i~~~~~ 78 (83)
T cd04492 8 SKELRTAKNGKPYLALTLQDKTGEIEAKLWDAS-EEDEEKFKPGDIVHVKGRVEEYRGRLQLKIQRIRLVTE 78 (83)
T ss_pred EHHHHCCCCCCCEEEEEEECCCCEEEEEECCCC-HHHHHCCCCCCEEEEEEEEEEECCCEEEEEEEEEECCC
T ss_conf 801000579991789999878876888885788-67883078999999999998889951089989689983