HHsearch alignment for GI: 254780945 and conserved domain: cd04497
>cd04497 hPOT1_OB1_like hPOT1_OB1_like: A subfamily of OB folds similar to the first OB fold (OB1) of human protection of telomeres 1 protein (hPOT1), the single OB fold of the N-terminal domain of Schizosaccharomyces pombe POT1 (SpPOT1), and the first OB fold of the N-terminal domain of the alpha subunit (OB1Nalpha) of Oxytricha nova telomere end binding protein (OnTEBP). POT1 proteins recognize single-stranded (ss) 3-prime ends of the telomere. A 3-prime ss overhang is conserved in ciliated protozoa, yeast, and mammals. SpPOT1 is essential for telomere maintenance. It binds specifically to the ss G-rich telomeric sequence (GGTTAC) of S. pombe. hPOT1 binds specifically to ss telomeric DNA repeats ending with the sequence GGTTAG. Deletion of the S. pombe pot1+ gene results in a rapid loss of telomere sequences, chromosome mis-segregation and chromosome circularization. hPOT1 is implicated in telomere length regulation. The hPOT1 monomer consists of two closely connected OB folds (OB1-OB
Probab=92.24 E-value=1 Score=25.15 Aligned_cols=83 Identities=16% Similarity=0.126 Sum_probs=60.3
Q ss_pred CCCHHHCC--CCCEEEEEEEEEEEEEECCCCCC--EEEEEEECCCC----EEEEEEECCCHHHHHHHCCCCCEEEEEE-E
Q ss_conf 46478889--98789999999897542158983--38999981893----6999995188789987328988899998-9
Q gi|254780945|r 58 RPKISEIS--EERIVTITGYISQHSSFQLQKRR--PYKILLNDGTG----EITLLFFYRKTEMLKNVFFEGRKITVTG-K 128 (700)
Q Consensus 58 ~~~I~~l~--~g~~vti~g~V~~~~~~~~~~r~--~~~v~v~D~tg----~i~lvfFn~~~~yl~k~lk~G~~v~vsG-K 128 (700)
T Consensus 3 y~~L~~a~~~~~~~VnvigVV~~~~~p~~s~g~d~~~tl~I~D~S~~~~~~l~v~~F~~~~~~LP~-v~~GDiIll~~~~ 81 (138)
T cd04497 3 YTPLSSALKESGGSVNVIGVVVDAGPPVRSKGTDYCCTLTITDPSLANSDGLTVKLFRPNEESLPI-VKVGDIILLRRVK 81 (138)
T ss_pred EEEHHHHHHHCCCEEEEEEEEEECCCCEECCCCEEEEEEEEECCCCCCCCCEEEEEECCCHHHCCC-CCCCCEEEEEEEE
T ss_conf 150899986349858899999865796446997299999999289999996799998998656989-9999899998889
Q ss_pred EEECCCEEEEECC
Q ss_conf 9731877999778
Q gi|254780945|r 129 IKKLKNRIIMVHP 141 (700)
Q Consensus 129 v~~~~~~~qi~hP 141 (700)
T Consensus 82 v~~~~~~~~~~~~ 94 (138)
T cd04497 82 IQSYNGKPQGISN 94 (138)
T ss_pred EEEECCEEEEEEC
T ss_conf 9998890799977