HHsearch alignment for GI: 254780945 and conserved domain: pfam00580
>pfam00580 UvrD-helicase UvrD/REP helicase. The Rep family helicases are composed of four structural domains. The Rep family function as dimers. REP helicases catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. Bacillus subtilis addA and Escherichia coli exodeoxyribonuclease V beta have large insertions near to the carboxy-terminus relative to other members of the family.
Probab=94.62 E-value=0.1 Score=33.03 Aligned_cols=21 Identities=24% Similarity=0.167 Sum_probs=14.5
Q ss_pred CCEEEECCCCCCCHHHHHHHH
Q ss_conf 417885210133568899874
Q gi|254780945|r 395 LILVIVDEQHRFGVQQRLKLT 415 (700)
Q Consensus 395 LgLvViDEQHRFGV~QR~~L~ 415 (700)
T Consensus 213 ~~~ilVDEfQDtn~~Q~~il~ 233 (494)
T pfam00580 213 FKYILVDEFQDTNPIQYELLK 233 (494)
T ss_pred CCEEECHHHCCCHHHHHHHHH
T ss_conf 726540343026499999999