HHsearch alignment for GI: 254780945 and conserved domain: pfam01336
>pfam01336 tRNA_anti OB-fold nucleic acid binding domain. This family contains OB-fold domains that bind to nucleic acids. The family includes the anti-codon binding domain of lysyl, aspartyl, and asparaginyl -tRNA synthetases (See pfam00152). Aminoacyl-tRNA synthetases catalyse the addition of an amino acid to the appropriate tRNA molecule EC:6.1.1.-. This family also includes part of RecG helicase involved in DNA repair. Replication factor A is a heterotrimeric complex, that contains a subunit in this family. This domain is also found at the C-terminus of bacterial DNA polymerase III alpha chain.
Probab=98.15 E-value=3.6e-05 Score=60.12 Aligned_cols=73 Identities=29% Similarity=0.402 Sum_probs=62.0
Q ss_pred EEEEEEEEEEEEECCCCCCEEEEEEECCCCEEEEEEECCCHHHHHHHCCCCCEEEEEEEEEECCCE-EEEECCEEEE
Q ss_conf 999999989754215898338999981893699999518878998732898889999899731877-9997786896
Q gi|254780945|r 70 VTITGYISQHSSFQLQKRRPYKILLNDGTGEITLLFFYRKTEMLKNVFFEGRKITVTGKIKKLKNR-IIMVHPHYIF 145 (700)
Q Consensus 70 vti~g~V~~~~~~~~~~r~~~~v~v~D~tg~i~lvfFn~~~~yl~k~lk~G~~v~vsGKv~~~~~~-~qi~hPe~~~ 145 (700)
T Consensus 1 v~v~G~V~~~~---~~~~~~~~~~l~D~tg~i~~~~~~~~~~~~~~~l~~g~~v~v~G~v~~~~~~~~~i~~~~i~~ 74 (75)
T pfam01336 1 VTVAGRVTSVR---RSGGKVAFLTLRDGTGSIQVVLFKEEAEKLAKKLKEGDVVLVTGKVKKRPGGELELVVEEIEV 74 (75)
T ss_pred CEEEEEEEEEE---ECCCCEEEEEEEECCEEEEEEEEHHHHHHHHHCCCCCCEEEEEEEEEECCCCCEEEEEEEEEE
T ss_conf 99999999518---879998999999799399999952386888632898989999999999749989999989997