HHsearch alignment for GI: 254780945 and conserved domain: pfam04466
>pfam04466 Terminase_3 Phage terminase large subunit. Initiation of packaging of double-stranded viral DNA involves the specific interaction of the prohead with viral DNA in a process mediated by a phage-encoded terminase protein. The terminase enzymes are usually hetero-oligomers composed of a small and a large subunit. This region is found on the large subunit and possess an endonuclease and ATPase activity that require Mg2+ and a neutral or slightly basic reaction. This region is also found in bacterial sequences.
Probab=94.63 E-value=0.44 Score=28.04 Aligned_cols=131 Identities=13% Similarity=0.211 Sum_probs=78.1
Q ss_pred EEEEEECCCCCHHH-HHHHHHHHHHHHHCCEEEEEHHHH-HHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHC
Q ss_conf 07886214422369-999997334443054588612799-9999998621101457865899624642256676877621
Q gi|254780945|r 295 LRILQGDVGSGKTL-VALIAMAAAVEAGGQAVIMAPIGI-LAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIA 372 (700)
Q Consensus 295 ~RLLQGDVGSGKTi-VA~~A~l~~~~~G~Q~alMaPTEI-LA~QH~~~~~~~~~~~~i~v~lLtg~~~~~er~~i~~~i~ 372 (700)
T Consensus 4 ~~v~~GGrgsgKS~~~a~~~i~~~~~~~~~~l~~r~~~~slr~sv~~~~~~~i~~~~~~~~~~~~~s~~~----i-~~~~ 78 (387)
T pfam04466 4 YKVAKGGRGSGKSYHIALKLVLKLLMHPRTNLVIREVKNTIEDSVFTQLQEALSMLGLDHEFKISKSPIE----I-TVKI 78 (387)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEE----E-EECC
T ss_conf 8999908886799999999999998789869999755688999999999999997699734897376148----9-9878
Q ss_pred CCCCEEEEECHHHCCCCC-CCCCCCEEEECCCCCCCHHHHHHH----HHCCCCCCCEEECHHHHHH
Q ss_conf 347548641112013345-544441788521013356889987----4025677610101013227
Q gi|254780945|r 373 HGQAHIIIGTHALFQDSI-QYYKLILVIVDEQHRFGVQQRLKL----TQKATAPHVLLMTATPIPR 433 (700)
Q Consensus 373 ~G~~~iiIGTHAL~q~~v-~F~~LgLvViDEQHRFGV~QR~~L----~~Kg~~ph~L~MtATPIPR 433 (700)
T Consensus 79 ~gs~i~f~G~d~~--~~iks~~~i~~~~~eEa~~~~~~~~~~l~~~~r~~~-~~~~i~~~~NP~~~ 141 (387)
T pfam04466 79 NGSKFLFYGMDDP--AKIKSIKDVSDAWIEEAAEFKTEDFDQLIPTIRRPK-PGSEIFMSFNPVNK 141 (387)
T ss_pred CCCEEEEEECCCH--HHHHCCCCCEEEEEECHHHCCHHHHHHHHHHHCCCC-CCEEEEEECCCCCC
T ss_conf 9969999857896--884163661499994124479989999998853178-87199998289998