HHsearch alignment for GI: 254780945 and conserved domain: pfam05496
>pfam05496 RuvB_N Holliday junction DNA helicase ruvB N-terminus. The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Probab=91.75 E-value=1.2 Score=24.75 Aligned_cols=20 Identities=25% Similarity=0.350 Sum_probs=16.4
Q ss_pred EEEECCCCCCCHHHHHHHHH
Q ss_conf 78852101335688998740
Q gi|254780945|r 397 LVIVDEQHRFGVQQRLKLTQ 416 (700)
Q Consensus 397 LvViDEQHRFGV~QR~~L~~ 416 (700)
T Consensus 104 ILFIDEIHr~nK~qqd~Llp 123 (234)
T pfam05496 104 VLFIDEIHRLNRAVEEILYP 123 (234)
T ss_pred EEEEECHHHCCHHHHHHCCC
T ss_conf 89996654358768874455