HHsearch alignment for GI: 254780945 and conserved domain: pfam06745

>pfam06745 KaiC KaiC. This family represents a conserved region within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria.

Probab=90.62  E-value=0.5  Score=27.61  Aligned_cols=56  Identities=21%  Similarity=0.233  Sum_probs=36.6

Q ss_pred             HCCCCCCE--EEEEECCCCCHHHHHHHHHHH-HHHHHCCEEEEEHHHHHHHHHHHHHHHH
Q ss_conf             10013430--788621442236999999733-4443054588612799999999862110
Q gi|254780945|r  288 MSQKNRML--RILQGDVGSGKTLVALIAMAA-AVEAGGQAVIMAPIGILAQQHYEFIKKY  344 (700)
Q Consensus       288 l~~~~pM~--RLLQGDVGSGKTiVA~~A~l~-~~~~G~Q~alMaPTEILA~QH~~~~~~~  344 (700)
T Consensus        12 l~GGi~~gs~~LI~G~pGsGKT~la~qfl~~ga~~~ge~~lYis~-ee~~~~l~~~~~~~   70 (231)
T pfam06745        12 LKGGIPEGRVVLITGGPGTGKTIFGLQFLYNGALEYGEPGVYVTL-EEPPEDLRENAKSF   70 (231)
T ss_pred             CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEE-CCCHHHHHHHHHHC
T ss_conf             169982996999985897259999999999999865896899981-37999999999982