HHsearch alignment for GI: 254780945 and conserved domain: pfam07517
>pfam07517 SecA_DEAD SecA DEAD-like domain. SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP dependent manner. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the pfam00270.
Probab=98.31 E-value=3e-06 Score=68.54 Aligned_cols=102 Identities=25% Similarity=0.307 Sum_probs=88.1
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHCCC
Q ss_conf 07886214422369999997334443054588612799999999862110145786589962464225667687762134
Q gi|254780945|r 295 LRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHG 374 (700)
Q Consensus 295 ~RLLQGDVGSGKTiVA~~A~l~~~~~G~Q~alMaPTEILA~QH~~~~~~~~~~~~i~v~lLtg~~~~~er~~i~~~i~~G 374 (700)
T Consensus 92 G~IaEM~TGEGKTL~atl~a~l~AL~Gk~VhvvTvNdYLA~RDae~m~~vy~~LGLsvg~i~~~~~~~err~aY~----- 166 (381)
T pfam07517 92 GKIAEMKTGEGKTLTATLPAYLNALSGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLSVGVITSDMSPEERREAYN----- 166 (381)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHH-----
T ss_conf 872588769981199999999997379974899758888688999979999984860542278898488898751-----
Q ss_pred CCEEEEECHHHCCC-----CC-------CCCCCCEEEECC
Q ss_conf 75486411120133-----45-------544441788521
Q gi|254780945|r 375 QAHIIIGTHALFQD-----SI-------QYYKLILVIVDE 402 (700)
Q Consensus 375 ~~~iiIGTHAL~q~-----~v-------~F~~LgLvViDE 402 (700)
T Consensus 167 -~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~~aIVDE 205 (381)
T pfam07517 167 -CDITYGTNSELGFDYLRDNMALSKEDKVQRGLNFAIVDE 205 (381)
T ss_pred -CCCEECCHHHHHHHHHHHHHHCCHHHHCCCCCCEEEEEC
T ss_conf -660550322321445323441582543457777699974