HHsearch alignment for GI: 254780945 and conserved domain: smart00487
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.71 E-value=3.2e-16 Score=146.76 Aligned_cols=155 Identities=29% Similarity=0.364 Sum_probs=126.7
Q ss_pred HCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHH--CCEEEEEHHHHHHHHHHHHHHHHC
Q ss_conf 302467988999999999841001343078862144223699999973344430--545886127999999998621101
Q gi|254780945|r 268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG--GQAVIMAPIGILAQQHYEFIKKYT 345 (700)
Q Consensus 268 ~LPF~LT~~Q~~ai~eI~~Dl~~~~pM~RLLQGDVGSGKTiVA~~A~l~~~~~G--~Q~alMaPTEILA~QH~~~~~~~~ 345 (700)
T Consensus 4 ~~~~~~~~~Q~~~~~~~~~~~-----~~~~i~~~tGsGKT~~~~~~~~~~~~~~~~~~~li~~P~~~l~~q~~~~~~~~~ 78 (201)
T smart00487 4 FGFEPLRPYQKEAIEALLSGL-----RDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLG 78 (201)
T ss_pred CCCCCCCHHHHHHHHHHHCCC-----CCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCC
T ss_conf 379999988999999998389-----988998999960999999999998633899759999085999999998860102
Q ss_pred CCCC-CEEEEEECCCCHHHHHHHHHHHCCCCCEEEEEC-----HHHCCCCCCCCCCCEEEECCCCCCCH-HHHHHHHHC-
Q ss_conf 4578-658996246422566768776213475486411-----12013345544441788521013356-889987402-
Q gi|254780945|r 346 QNTQ-IIVEIITGNMPQAHRRKALERIAHGQAHIIIGT-----HALFQDSIQYYKLILVIVDEQHRFGV-QQRLKLTQK- 417 (700)
Q Consensus 346 ~~~~-i~v~lLtg~~~~~er~~i~~~i~~G~~~iiIGT-----HAL~q~~v~F~~LgLvViDEQHRFGV-~QR~~L~~K- 417 (700)
T Consensus 79 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~vIiDE~H~~~~~~~~~~~~~~~ 154 (201)
T smart00487 79 PSLGLKVVGLYGGDSK----REQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLL 154 (201)
T ss_pred CCCEEEEEEEECCCCH----HHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCCCEEEEEECHHHHHCCCCHHHHHHHH
T ss_conf 1020445565247737----999999975999899955899999997275452543199998967751257099999999
Q ss_pred ---CCCCCCEEECHHHH
Q ss_conf ---56776101010132
Q gi|254780945|r 418 ---ATAPHVLLMTATPI 431 (700)
Q Consensus 418 ---g~~ph~L~MtATPI 431 (700)
T Consensus 155 ~~~~~~~~~i~lSAT~~ 171 (201)
T smart00487 155 KLLPKNVQLLLLSATPP 171 (201)
T ss_pred HHCCCCCCEEEECCCCC
T ss_conf 96799997899924898