HHsearch alignment for GI: 254780945 and conserved domain: smart00488

Probab=97.61  E-value=0.002  Score=46.38  Aligned_cols=76  Identities=17%  Similarity=0.242  Sum_probs=55.3

Q ss_pred             HCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHH------HCCEEEEEHHHHHHHHHHHHH
Q ss_conf             30246798899999999984100134307886214422369999997334443------054588612799999999862
Q gi|254780945|r  268 NIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA------GGQAVIMAPIGILAQQHYEFI  341 (700)
Q Consensus       268 ~LPF~LT~~Q~~ai~eI~~Dl~~~~pM~RLLQGDVGSGKTiVA~~A~l~~~~~------G~Q~alMaPTEILA~QH~~~~  341 (700)
T Consensus         4 ~FPy~py~~Q~e~m~~v~~~l~~~~~--~llEaPTGtGKTlalL~~al~~~~~~~~~~~~~ki~~~t~t~~~~~~~~~el   81 (289)
T smart00488        4 YFPYEPYPIQYEFMEELKRVLDRGKI--GILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEEL   81 (289)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHCCCE--EEEECCCCHHHHHHHHHHHHHHHHHCHHCCCCCEEEEEECCHHHHHHHHHHH
T ss_conf             78999998999999999999974997--9998999651899999999999996701024561687615378899999999


Q ss_pred             HHHC
Q ss_conf             1101
Q gi|254780945|r  342 KKYT  345 (700)
Q Consensus       342 ~~~~  345 (700)
T Consensus        82 r~~~   85 (289)
T smart00488       82 RKLM   85 (289)
T ss_pred             HHHC
T ss_conf             8632