RPSBLAST alignment for GI: 254780945 and conserved domain: TIGR00595
>gnl|CDD|161946 TIGR00595, priA, primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Length = 505
Score = 74.3 bits (183), Expect = 1e-13
Identities = 92/422 (21%), Positives = 157/422 (37%), Gaps = 105/422 (24%)
Query: 298 LQGDVGSGKTLVALIAMAAAVEAGGQAVIMAP-IGILAQQHYEFIKKYTQNTQIIVEIIT 356
L G GSGKT V L A+ + G +++ P I + Q F KY +Q V ++
Sbjct: 2 LFGVTGSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRF--KYRFGSQ--VAVLH 57
Query: 357 GNMPQAHRRKALERIAHGQAHIIIGTH-ALFQDSIQYYKLILVIVDEQHRFGVQQR---- 411
+ + + +A ++ +G+ ++IGT ALF + + L L+IVDE+H +Q
Sbjct: 58 SGLSDSEKLQAWRKVKNGEILVVIGTRSALF---LPFKNLGLIIVDEEHDSSYKQEEGPR 114
Query: 412 -------LKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIP 464
+ +K P V+L +ATP + + +T + +GRKP + +I
Sbjct: 115 YHARDVAVYRAKKFNCP-VVLGSATPSLESYHNAKQKAYRLLVLTRRVSGRKPPEVKLID 173
Query: 465 INR-------IDEVIERLKVVLSEGKKA------------------YWI----------- 488
+ + E+I ++ L+ G+++ +I
Sbjct: 174 MRKEPRQSFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLLCRSCGYILCCPNCDVSLT 233
Query: 489 ----------------------CPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRM- 525
CPQ + E+ I R+
Sbjct: 234 YHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIA--RID 291
Query: 526 SDIDK-----ESVMDSFKNGTCKLLIATTVIEVGID--------VVDASIIIIEN----A 568
SD E++++ F NG +LI T +I G V+DA + A
Sbjct: 292 SDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAA 351
Query: 569 EHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNTEDGFLIAEEDLKQR 628
E G L Q+ GR GR E+ I+ + P N + L + F E++L QR
Sbjct: 352 ER-GFQLLTQVAGRAGRAEDPGQVIIQTYNP---NHPAIQAALTGDYEAFY--EQELAQR 405
Query: 629 KE 630
+
Sbjct: 406 RA 407