RPSBLAST alignment for GI: 254780945 and conserved domain: KOG0330
>gnl|CDD|35551 KOG0330, KOG0330, KOG0330, ATP-dependent RNA helicase [RNA processing and modification]. Length = 476
Score = 53.8 bits (129), Expect = 2e-07
Identities = 74/412 (17%), Positives = 149/412 (36%), Gaps = 42/412 (10%)
Query: 273 PTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQ---AVIMAP 329
PTK Q AI L R + L + GSGKT + + + + A+++ P
Sbjct: 84 PTKIQSEAIPVALG-----GRDVIGL-AETGSGKTGAFALPILQRLLQEPKLFFALVLTP 137
Query: 330 IGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT------H 383
LAQQ E + + V ++ G M + L + + HI++ T H
Sbjct: 138 TRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSK----KPHILVATPGRLWDH 193
Query: 384 ALFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDI 443
+L +++DE R + ++ P R L S
Sbjct: 194 LENTKGFSLEQLKFLVLDEADRLLDMDFEEELDY-------ILKVIPRERQTFLFSATMT 246
Query: 444 DISKITEKPAGRKPIKTVIIPINRI-DEVIERLKVVLSEGKKAYWICPQIEEKKESNF-- 500
+ ++ + P+K + + D + + V + K Y + + E ++
Sbjct: 247 KKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKDKDTYLV-YLLNELAGNSVIV 305
Query: 501 ---RSVVERFNS--LHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGI 555
RF + L +I +HG+MS + ++ FK G +L+ T V G+
Sbjct: 306 FCNTCNTTRFLALLLRNLGFQAIP-LHGQMSQSKRLGALNKFKAGARSILVCTDVASRGL 364
Query: 556 DVVDASIIIIENAEHFGLAQLHQL--RGRVGRGEEISSCILLYHPPL----SKNSYTRLS 609
D+ +++ + +H++ R GR + + + Y L +L
Sbjct: 365 DIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGKKLP 424
Query: 610 VLKNTEDGFLIAEEDLKQRKEGEILGIKQSGMPKFLIAQPELHDSLLEIARK 661
K ++ + E + + ++ + +K+ G K Q + D ++ +
Sbjct: 425 EYKVDKNEVMSLNERVAEAQKEAGMEMKELGKRKGKRPQGDAFDEEMDGGER 476