RPSBLAST alignment for GI: 254780945 and conserved domain: KOG0333

>gnl|CDD|35554 KOG0333, KOG0333, KOG0333, U5 snRNP-like RNA helicase subunit [RNA processing and modification]. Length = 673
 Score = 47.7 bits (113), Expect = 1e-05
 Identities = 82/374 (21%), Positives = 148/374 (39%), Gaps = 64/374 (17%)

Query: 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA----------- 320
            PT  Q  AI   LQ+         I   + GSGKT   LI +   + +           
Sbjct: 267 EPTPIQRQAIPLGLQNRDP------IGVAETGSGKTAAFLIPLLIWISSLPPMARLENNI 320

Query: 321 -GGQAVIMAPIGILAQQHYEFIKKYTQNTQI-IVEIITGNMPQAHRRKALERIAHGQAHI 378
            G  A+I+AP   LAQQ  E   K+ +   I  V +I G        +   +++ G   I
Sbjct: 321 EGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGG----LSFEEQGFQLSMG-CEI 375

Query: 379 IIGTHALFQDSIQYYKLIL-----VIVDEQHRF-------GVQQRL---------KLTQK 417
           +I T     DS++   L+L     V++DE  R         VQ+ L           T +
Sbjct: 376 VIATPGRLIDSLENRYLVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDE 435

Query: 418 ATAPHVLLM---TATPIPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIER 474
                 +     ++    +T++ T+     + ++  +   R+P+   I    +    +E+
Sbjct: 436 KEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLA-RSYLRRPVVVTIGSAGKPTPRVEQ 494

Query: 475 LKVVLSEGKKAYWICPQIEEKKES------NFRSVVERFNSLHEHFTSSIAIIHGRMSDI 528
              ++SE +K   +   +E   +       N +   +    + E     +  +HG  S  
Sbjct: 495 KVEMVSEDEKRKKLIEILESNFDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQE 554

Query: 529 DKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII----IENAEHFGLAQLHQLRGRVG 584
            +E+ +  F+ GT  +L+AT V   GID+ + S++I     ++ E +     H++ GR G
Sbjct: 555 QRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDY----THRI-GRTG 609

Query: 585 RGEEISSCILLYHP 598
           R  +  + I    P
Sbjct: 610 RAGKSGTAISFLTP 623