RPSBLAST alignment for GI: 254780945 and conserved domain: KOG0336
>gnl|CDD|35557 KOG0336, KOG0336, KOG0336, ATP-dependent RNA helicase [RNA processing and modification]. Length = 629
Score = 44.2 bits (104), Expect = 1e-04
Identities = 70/330 (21%), Positives = 124/330 (37%), Gaps = 71/330 (21%)
Query: 303 GSGKTLVALIAMAAAVEA---------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
G+GKTL L+ ++A G +++ P LA Q +KKY+ N V
Sbjct: 267 GTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYSYNGLKSVC 326
Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR--- 405
+ G +R + +E + G III T D I + +++DE R
Sbjct: 327 VYGG----GNRNEQIEDLKRG-VEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLD 381
Query: 406 --FGVQ----------QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
F Q R + AT P + A + ++ +G +D+ +
Sbjct: 382 MGFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAV----- 436
Query: 454 GRKPIKTVIIPINRID--EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
K +K II + E+++ +S K + +
Sbjct: 437 --KSVKQNIIVTTDSEKLEIVQFFVANMSSNDKVIIFVSR----------------KVMA 478
Query: 512 EHFTSSIAI-------IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
+H +S + +HG D+E ++ FK+G ++L+AT + G+DV D + +
Sbjct: 479 DHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVY 538
Query: 565 IENAEHFGLAQLHQLRGRVGR----GEEIS 590
+ +H++ GR GR G IS
Sbjct: 539 NYDFPRNIEEYVHRV-GRTGRAGRTGTSIS 567