RPSBLAST alignment for GI: 254780945 and conserved domain: KOG0336

>gnl|CDD|35557 KOG0336, KOG0336, KOG0336, ATP-dependent RNA helicase [RNA processing and modification]. Length = 629
 Score = 44.2 bits (104), Expect = 1e-04
 Identities = 70/330 (21%), Positives = 124/330 (37%), Gaps = 71/330 (21%)

Query: 303 GSGKTLVALIAMAAAVEA---------GGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVE 353
           G+GKTL  L+     ++A         G   +++ P   LA Q    +KKY+ N    V 
Sbjct: 267 GTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYSYNGLKSVC 326

Query: 354 IITGNMPQAHRRKALERIAHGQAHIIIGTHALFQD-----SIQYYKLILVIVDEQHR--- 405
           +  G     +R + +E +  G   III T     D      I    +  +++DE  R   
Sbjct: 327 VYGG----GNRNEQIEDLKRG-VEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLD 381

Query: 406 --FGVQ----------QRLKLTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPA 453
             F  Q           R  +   AT P  +   A    +  ++  +G +D+  +     
Sbjct: 382 MGFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAV----- 436

Query: 454 GRKPIKTVIIPINRID--EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLH 511
             K +K  II     +  E+++     +S   K      +                  + 
Sbjct: 437 --KSVKQNIIVTTDSEKLEIVQFFVANMSSNDKVIIFVSR----------------KVMA 478

Query: 512 EHFTSSIAI-------IHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII 564
           +H +S   +       +HG     D+E  ++ FK+G  ++L+AT +   G+DV D + + 
Sbjct: 479 DHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVY 538

Query: 565 IENAEHFGLAQLHQLRGRVGR----GEEIS 590
             +        +H++ GR GR    G  IS
Sbjct: 539 NYDFPRNIEEYVHRV-GRTGRAGRTGTSIS 567