RPSBLAST alignment for GI: 254780945 and conserved domain: KOG0344
>gnl|CDD|35565 KOG0344, KOG0344, KOG0344, ATP-dependent RNA helicase [RNA processing and modification]. Length = 593
Score = 65.4 bits (159), Expect = 5e-11
Identities = 88/495 (17%), Positives = 184/495 (37%), Gaps = 63/495 (12%)
Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF 247
EK+ LQ S E + + +K K + + +A + L LL +RK
Sbjct: 59 SEEKEKLQNSDSSSPLEDIDRRGSSKKTKPKMEEKLSEDVIAAKKKLQTSEKLLGIRKSN 118
Query: 248 K-----KEIGIPI----------NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
K + P+ ++ ++ + + PT Q+ AI L+
Sbjct: 119 KINVDGFHLPPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLE-----K 173
Query: 293 RMLRILQGDVGSGKTLVALIAM--------AAAVEAGGQAVIMAPIGILAQQHYEFIKKY 344
R + + GSGKTL + + + G +A+I++P LA Q Y ++KY
Sbjct: 174 RDV-LACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKY 232
Query: 345 TQN--TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL----- 397
+ + T + + + + L + I+I T + KL +
Sbjct: 233 SIDEGTSLRAAQFSKPAYPSQKPAFLSDE---KYDILISTPMRIVGLLGLGKLNIDLSKV 289
Query: 398 --VIVDEQHR-----FGVQQRLKLTQKATAPHVL--LMTAT-PIPRTLVLTSLGDIDISK 447
++VDE F V+Q + +P + L +AT + +
Sbjct: 290 EWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRV 349
Query: 448 I-TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506
I + + + + ++ + L+ +++ G K + +++ +E
Sbjct: 350 IVGLRNSANETVDQELVFCGSEKGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELEI 409
Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
+++++ + +IHG S ++ M+ F+ G +LI T ++ GID +++I
Sbjct: 410 YDNIN------VDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVINY 463
Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT--EDGFLIAEED 624
+ L+ +H++ GR GR I Y + R+ + + G + E+
Sbjct: 464 DFPQSDLSYIHRI-GRTGRAGRSGKAITFY----TDQDMPRIRSIAEVMEQSGCEVPEKI 518
Query: 625 LKQRKEGEILGIKQS 639
+ +K + K
Sbjct: 519 MGIKKLSRLKKKKLL 533