RPSBLAST alignment for GI: 254780945 and conserved domain: KOG0344

>gnl|CDD|35565 KOG0344, KOG0344, KOG0344, ATP-dependent RNA helicase [RNA processing and modification]. Length = 593
 Score = 65.4 bits (159), Expect = 5e-11
 Identities = 88/495 (17%), Positives = 184/495 (37%), Gaps = 63/495 (12%)

Query: 188 WIEKDLLQKKSFPSIAEAFNIIHNPRKAKDFEWTSPARERLAYDELLAGQIALLLMRKQF 247
             EK+ LQ     S  E  +   + +K K       + + +A  + L     LL +RK  
Sbjct: 59  SEEKEKLQNSDSSSPLEDIDRRGSSKKTKPKMEEKLSEDVIAAKKKLQTSEKLLGIRKSN 118

Query: 248 K-----KEIGIPI----------NVEGKIAQKILRNIPFSPTKSQESAIKDILQDMSQKN 292
           K       +  P+          ++  ++ + +       PT  Q+ AI   L+      
Sbjct: 119 KINVDGFHLPPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLE-----K 173

Query: 293 RMLRILQGDVGSGKTLVALIAM--------AAAVEAGGQAVIMAPIGILAQQHYEFIKKY 344
           R + +     GSGKTL   + +            + G +A+I++P   LA Q Y  ++KY
Sbjct: 174 RDV-LACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKY 232

Query: 345 TQN--TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLIL----- 397
           + +  T +     +     + +   L      +  I+I T       +   KL +     
Sbjct: 233 SIDEGTSLRAAQFSKPAYPSQKPAFLSDE---KYDILISTPMRIVGLLGLGKLNIDLSKV 289

Query: 398 --VIVDEQHR-----FGVQQRLKLTQKATAPHVL--LMTAT-PIPRTLVLTSLGDIDISK 447
             ++VDE        F V+Q   +     +P +   L +AT  +        +       
Sbjct: 290 EWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRV 349

Query: 448 I-TEKPAGRKPIKTVIIPINRIDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVER 506
           I   + +  + +   ++        +  L+ +++ G K   +     +++       +E 
Sbjct: 350 IVGLRNSANETVDQELVFCGSEKGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELEI 409

Query: 507 FNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE 566
           +++++      + +IHG  S   ++  M+ F+ G   +LI T ++  GID    +++I  
Sbjct: 410 YDNIN------VDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVINY 463

Query: 567 NAEHFGLAQLHQLRGRVGRGEEISSCILLYHPPLSKNSYTRLSVLKNT--EDGFLIAEED 624
           +     L+ +H++ GR GR       I  Y    +     R+  +     + G  + E+ 
Sbjct: 464 DFPQSDLSYIHRI-GRTGRAGRSGKAITFY----TDQDMPRIRSIAEVMEQSGCEVPEKI 518

Query: 625 LKQRKEGEILGIKQS 639
           +  +K   +   K  
Sbjct: 519 MGIKKLSRLKKKKLL 533