Query gi|254780946|ref|YP_003065359.1| hypothetical protein CLIBASIA_04225 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 98
No_of_seqs 114 out of 652
Neff 5.9
Searched_HMMs 33803
Date Wed Jun 1 20:03:01 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780946.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1x6i_A Hypothetical protein Y 99.9 7.5E-27 2.2E-31 175.6 7.7 87 3-89 2-88 (91)
2 >1puz_A Conserved hypothetical 99.9 2.3E-26 6.9E-31 172.7 9.1 81 1-82 1-81 (82)
3 >2jr5_A UPF0350 protein VC_247 99.1 1.2E-10 3.6E-15 81.8 7.4 55 36-90 1-55 (62)
4 >2pid_A Tyrosyl-tRNA synthetas 33.8 35 0.001 15.5 4.0 38 44-81 24-61 (107)
5 >1h3f_A Tyrosyl-tRNA synthetas 32.9 36 0.0011 15.4 3.5 50 38-87 8-57 (115)
6 >3erm_A Uncharacterized conser 31.9 37 0.0011 15.3 5.7 53 18-70 29-81 (91)
7 >1y42_X Tyrosyl-tRNA synthetas 30.9 39 0.0011 15.2 2.9 39 43-81 5-43 (86)
8 >2yxn_A Tyrosyl-tRNA synthetas 28.1 44 0.0013 14.9 3.6 39 44-82 19-57 (87)
9 >1x2m_A LAG1 longevity assuran 27.9 44 0.0013 14.9 3.4 39 27-65 14-52 (64)
10 >2q14_A Phosphohydrolase; BT42 25.1 41 0.0012 15.1 1.9 77 6-82 9-90 (92)
11 >2wvr_C DNA replication factor 24.4 18 0.00054 17.1 0.0 52 11-62 462-513 (546)
12 >2da1_A Alpha-fetoprotein enha 24.0 52 0.0015 14.5 2.5 44 20-65 15-58 (70)
13 >2jan_A Tyrosyl-tRNA synthetas 23.4 53 0.0016 14.4 4.0 36 45-80 5-40 (97)
14 >1xrx_A SEQA protein; protein 23.3 50 0.0015 14.6 2.1 33 54-86 6-38 (50)
15 >3euk_L Chromosome partition p 22.4 56 0.0017 14.3 3.3 76 18-94 1-84 (155)
No 1
>>1x6i_A Hypothetical protein YGFY; structural genomics, transcriptional regulation, structure 2 function project, S2F, unknown function; 1.20A {Escherichia coli} PDB: 1x6j_A (A:)
Probab=99.94 E-value=7.5e-27 Score=175.62 Aligned_cols=87 Identities=24% Similarity=0.386 Sum_probs=82.9
Q ss_pred CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 65899999999999740789999999999999820299999999999946891799999948899980675699999999
Q gi|254780946|r 3 KNMNLQCRKIVYRCWRRGTREMDLILGSFVDHFILELSSVELTMLESIIEEDDSNLFKWFTGMEKPPEYLRTPIFKKIYD 82 (98)
Q Consensus 3 ~~ld~~~krl~~Rs~rRG~kElDllL~~F~~~~~~~l~~~el~~f~~LL~~~D~dL~~wl~~~~~~p~~~~~~ii~~I~~ 82 (98)
++++.+++|++||||||||+|+|+|||+|++++++++|+++++.|+.||+++|+|||+|++|+++||+...++++++|++
T Consensus 2 e~~d~~~~r~l~~~~rRG~~ElDliL~~F~~~~~~~ls~~el~~fe~LL~~~D~dL~~wl~g~~~~p~~~~~~ii~~i~~ 81 (91)
T 1x6i_A 2 SHMDINNKARIHWACRRGMRELDISIMPFFEHEYDSLSDDEKRIFIRLLECDDPDLFNWLMNHGKPADAELEMMVRLIQT 81 (91)
T ss_dssp -CCCTTCHHHHHHHTCCSSHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHTSCHHHHHHHHTTSSBCSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf 87566679898988104619999999999999998799999999999983990999999948999999999999999999
Q ss_pred HHHHHHH
Q ss_conf 9982277
Q gi|254780946|r 83 YYSNNLD 89 (98)
Q Consensus 83 f~~~~~~ 89 (98)
|++++..
T Consensus 82 ~~~~~~~ 88 (91)
T 1x6i_A 82 RNRERGP 88 (91)
T ss_dssp HHHHHSC
T ss_pred HHHCCCC
T ss_conf 7060388
No 2
>>1puz_A Conserved hypothetical protein; NMA1147, MR19, structural genomics, PSI, protein structure initiative; NMR {Neisseria meningitidis MC58} (A:)
Probab=99.93 E-value=2.3e-26 Score=172.75 Aligned_cols=81 Identities=31% Similarity=0.457 Sum_probs=79.2
Q ss_pred CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 98658999999999997407899999999999998202999999999999468917999999488999806756999999
Q gi|254780946|r 1 MKKNMNLQCRKIVYRCWRRGTREMDLILGSFVDHFILELSSVELTMLESIIEEDDSNLFKWFTGMEKPPEYLRTPIFKKI 80 (98)
Q Consensus 1 M~~~ld~~~krl~~Rs~rRG~kElDllL~~F~~~~~~~l~~~el~~f~~LL~~~D~dL~~wl~~~~~~p~~~~~~ii~~I 80 (98)
|++..+.+++||+||| ||||+|+|+|||+|++++++++|++++..|+.||+++|+|||+|++|+++||+...++++++|
T Consensus 1 M~~~~~~~~~Rl~~r~-rRGm~ElDlll~~F~~~~~~~ls~~e~~~f~~LL~~~D~dL~~w~~g~~~~p~~~~~~ii~~i 79 (82)
T 1puz_A 1 MMVFDDIAKRKIRFQT-RRGLLELDLIFGRFMEKEFEHLSDKELSEFSEILEFQDQELLALINGHSETDKGHLIPMLEKI 79 (82)
T ss_dssp CCCCCHHHHHHHHHHS-CCSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHTSCHHHHHHHHHTCSCCSCTTHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf 9756388998999993-132599999899999998987999999999999849909999999389999929999999999
Q ss_pred HH
Q ss_conf 99
Q gi|254780946|r 81 YD 82 (98)
Q Consensus 81 ~~ 82 (98)
+.
T Consensus 80 r~ 81 (82)
T 1puz_A 80 RR 81 (82)
T ss_dssp HH
T ss_pred HC
T ss_conf 70
No 3
>>2jr5_A UPF0350 protein VC_2471; structure, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Vibrio cholerae} (A:33-94)
Probab=99.15 E-value=1.2e-10 Score=81.82 Aligned_cols=55 Identities=20% Similarity=0.309 Sum_probs=51.7
Q ss_pred HCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2029999999999994689179999994889998067569999999999822776
Q gi|254780946|r 36 ILELSSVELTMLESIIEEDDSNLFKWFTGMEKPPEYLRTPIFKKIYDYYSNNLDR 90 (98)
Q Consensus 36 ~~~l~~~el~~f~~LL~~~D~dL~~wl~~~~~~p~~~~~~ii~~I~~f~~~~~~~ 90 (98)
|+++|++++..|.+||+++|||||+|+||++.||++....++.+|+.+++.++..
T Consensus 1 y~~Ls~~ek~~F~~LL~ceDpdLF~WfM~~~~p~Dpel~~mV~~I~~r~~~k~~~ 55 (62)
T 2jr5_A 1 FDSLTESEQDDFVALLESDDPDLFAWVMGHGRCENLGLAAMVDKIVAHNLSKVRL 55 (62)
T ss_dssp TTTCCHHHHHHHHHHHTSCCHHHHHHHHTCCCCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 9879999999999998099099999995899999899999999999999987520
No 4
>>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP- binding, ligase, mitochondrion, nucleotide-binding; HET: YSA; 2.20A {Homo sapiens} (A:1-20,A:270-356)
Probab=33.78 E-value=35 Score=15.51 Aligned_cols=38 Identities=8% Similarity=0.095 Sum_probs=25.6
Q ss_pred HHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 99999994689179999994889998067569999999
Q gi|254780946|r 44 LTMLESIIEEDDSNLFKWFTGMEKPPEYLRTPIFKKIY 81 (98)
Q Consensus 44 l~~f~~LL~~~D~dL~~wl~~~~~~p~~~~~~ii~~I~ 81 (98)
-+.|..++..+|.++.+|+.--...|.....++.+...
T Consensus 24 y~mYqk~mni~D~~v~~yl~llT~l~~eeI~~L~~~~~ 61 (107)
T 2pid_A 24 FELYQFFVRQPDDSVERYLKLFTFLPLPEIDHIMQLHV 61 (107)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 99999982699989999999965799999999999873
No 5
>>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYB; 2.0A {Thermus thermophilus} (A:235-349)
Probab=32.93 E-value=36 Score=15.43 Aligned_cols=50 Identities=14% Similarity=0.042 Sum_probs=33.7
Q ss_pred CCCHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 29999999999994689179999994889998067569999999999822
Q gi|254780946|r 38 ELSSVELTMLESIIEEDDSNLFKWFTGMEKPPEYLRTPIFKKIYDYYSNN 87 (98)
Q Consensus 38 ~l~~~el~~f~~LL~~~D~dL~~wl~~~~~~p~~~~~~ii~~I~~f~~~~ 87 (98)
-++++-.+-|..++..+|.++.+|+.--...|......+...=..-++..
T Consensus 8 ~Ld~sP~~~yq~~~ni~D~~v~~yl~llT~l~~~eI~~l~~~~~r~aqk~ 57 (115)
T 1h3f_A 8 GLTEPPEAMFKKLMRVPDPLLPSYFRLLTDLEEEEIEALLKAGPVPAHRV 57 (115)
T ss_dssp BTTSCHHHHHHHHHTSCGGGHHHHHHHHCCCCHHHHHHHHHHCHHHHHHH
T ss_pred EECCCHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHH
T ss_conf 62278799999998646314567877743314888999986495369999
No 6
>>3erm_A Uncharacterized conserved protein; APC85034, ppspto1197, seudomonas syringae PV. tomato STR. DC3000, structural genomics, PSI-2; HET: MSE; 2.45A {Pseudomonas syringae PV} (A:)
Probab=31.90 E-value=37 Score=15.33 Aligned_cols=53 Identities=9% Similarity=0.007 Sum_probs=44.8
Q ss_pred HCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCCCC
Q ss_conf 40789999999999999820299999999999946891799999948899980
Q gi|254780946|r 18 RRGTREMDLILGSFVDHFILELSSVELTMLESIIEEDDSNLFKWFTGMEKPPE 70 (98)
Q Consensus 18 rRG~kElDllL~~F~~~~~~~l~~~el~~f~~LL~~~D~dL~~wl~~~~~~p~ 70 (98)
|--|+|+-=-|..|+.+....+++.+...+--+|..+-..+-..+-|+.++..
T Consensus 29 yDKMLdlAd~L~~~L~~~~~~lde~~~E~l~l~LA~nKd~l~~~lKg~~~~~~ 81 (91)
T 3erm_A 29 HDQXLELAELLTDVLIKNVPGLSEKHAEDASIYXAKNRAVFAAAFKNNATALS 81 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHTTHHHHHHHHHSCGGGGG
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 99999999999999983889988889999999999779999999858987433
No 7
>>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A (X:307-392)
Probab=30.94 E-value=39 Score=15.24 Aligned_cols=39 Identities=8% Similarity=0.019 Sum_probs=27.0
Q ss_pred HHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 999999994689179999994889998067569999999
Q gi|254780946|r 43 ELTMLESIIEEDDSNLFKWFTGMEKPPEYLRTPIFKKIY 81 (98)
Q Consensus 43 el~~f~~LL~~~D~dL~~wl~~~~~~p~~~~~~ii~~I~ 81 (98)
--+.|..++..+|.++..|+.--...|......+.+.+.
T Consensus 5 p~~myq~~~~i~D~~i~~yl~llT~l~~~eI~~l~~~~~ 43 (86)
T 1y42_X 5 VFDFYGYFVRRSDQEVENLLKLFTFMPISEITKTMEEHI 43 (86)
T ss_dssp HHHHHHHHHTCCTTTHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 789999880698989999999970699999999999876
No 8
>>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A* (A:1-15,A:251-322)
Probab=28.08 E-value=44 Score=14.94 Aligned_cols=39 Identities=5% Similarity=0.049 Sum_probs=24.7
Q ss_pred HHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 999999946891799999948899980675699999999
Q gi|254780946|r 44 LTMLESIIEEDDSNLFKWFTGMEKPPEYLRTPIFKKIYD 82 (98)
Q Consensus 44 l~~f~~LL~~~D~dL~~wl~~~~~~p~~~~~~ii~~I~~ 82 (98)
.+.|..++..+|.++.+|+.--...|......+.+...+
T Consensus 19 ~~~Yq~~mnv~D~~v~~yl~llT~l~~eeI~~l~~~~~~ 57 (87)
T 2yxn_A 19 YKFYQFWINTADADVYRFLKFFTFMSIEEINALEEEDKN 57 (87)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHC
T ss_conf 899998717987899999998605999999999998763
No 9
>>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} (A:)
Probab=27.88 E-value=44 Score=14.92 Aligned_cols=39 Identities=18% Similarity=0.260 Sum_probs=31.3
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHCC
Q ss_conf 999999998202999999999999468917999999488
Q gi|254780946|r 27 ILGSFVDHFILELSSVELTMLESIIEEDDSNLFKWFTGM 65 (98)
Q Consensus 27 lL~~F~~~~~~~l~~~el~~f~~LL~~~D~dL~~wl~~~ 65 (98)
+|..++..+-+..|..+...+..-+.+++.-+..|+-++
T Consensus 14 ~Le~~F~~~~~~Ps~~~r~~La~~~~l~~~qV~~WFqNr 52 (64)
T 1x2m_A 14 ILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQR 52 (64)
T ss_dssp HHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 999999983899989999999999499858999975876
No 10
>>2q14_A Phosphohydrolase; BT4208, HD domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE ADP; 2.20A {Bacteroides thetaiotaomicron vpi-5482} (A:224-315)
Probab=25.09 E-value=41 Score=15.07 Aligned_cols=77 Identities=14% Similarity=0.121 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHH---HCC-HHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 999999999997---407-89999999999999820299-9999999999468917999999488999806756999999
Q gi|254780946|r 6 NLQCRKIVYRCW---RRG-TREMDLILGSFVDHFILELS-SVELTMLESIIEEDDSNLFKWFTGMEKPPEYLRTPIFKKI 80 (98)
Q Consensus 6 d~~~krl~~Rs~---rRG-~kElDllL~~F~~~~~~~l~-~~el~~f~~LL~~~D~dL~~wl~~~~~~p~~~~~~ii~~I 80 (98)
|....+|.-|++ +.| ....+-.+.+|+.+...... .+.-...+..+..+|.+++..+..=...+++....+-+++
T Consensus 9 E~iL~~il~RAk~L~~~g~~~~~~~~l~~fl~~~~~~~~f~~~~~~L~~yl~LDD~~i~~~~~~W~~~~D~ILsdL~~r~ 88 (92)
T 2q14_A 9 ERXLISTLLRAKELASQGVELFASPALHFFLYNDINHTEFHNNPDCLENFIQLDDNDIWTALKVWSNHPDKVLSTLSLGX 88 (92)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHSSCCCHHHHHHCHHHHHHHTTCCHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 99999999999998863111026716544203310110034664219999973569999999985037568999999998
Q ss_pred HH
Q ss_conf 99
Q gi|254780946|r 81 YD 82 (98)
Q Consensus 81 ~~ 82 (98)
.+
T Consensus 89 ln 90 (92)
T 2q14_A 89 IN 90 (92)
T ss_dssp HH
T ss_pred HH
T ss_conf 72
No 11
>>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* (C:)
Probab=24.39 E-value=18 Score=17.11 Aligned_cols=52 Identities=13% Similarity=0.119 Sum_probs=42.4
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 9999997407899999999999998202999999999999468917999999
Q gi|254780946|r 11 KIVYRCWRRGTREMDLILGSFVDHFILELSSVELTMLESIIEEDDSNLFKWF 62 (98)
Q Consensus 11 rl~~Rs~rRG~kElDllL~~F~~~~~~~l~~~el~~f~~LL~~~D~dL~~wl 62 (98)
+.++.+.++....++.|+....+.+-..++..|.+...+||..--+|....+
T Consensus 462 ~~~~~~~~~~~~~~~~~~~~i~~s~~~~~~~~e~~~~l~~l~~~~p~~~~~~ 513 (546)
T 2wvr_C 462 RSVFVSERKPALSMEVACARMVGSCCTIMSPGEMEKHLLLLSELLPDWLSLH 513 (546)
T ss_dssp ----------------------------------------------------
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 9999753777507999999999854576999999999999998687206998
No 12
>>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens} (A:)
Probab=23.96 E-value=52 Score=14.49 Aligned_cols=44 Identities=9% Similarity=0.112 Sum_probs=36.8
Q ss_pred CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHCC
Q ss_conf 7899999999999998202999999999999468917999999488
Q gi|254780946|r 20 GTREMDLILGSFVDHFILELSSVELTMLESIIEEDDSNLFKWFTGM 65 (98)
Q Consensus 20 G~kElDllL~~F~~~~~~~l~~~el~~f~~LL~~~D~dL~~wl~~~ 65 (98)
.-..+++|-.-|..+.++ +..+...+..-+.++..-+..|+.++
T Consensus 15 t~~ql~~Le~~F~~n~yP--~~~~~~~La~~~gl~~~qV~~WFqNr 58 (70)
T 2da1_A 15 TDDQLRVLRQYFDINNSP--SEEQIKEMADKSGLPQKVIKHWFRNT 58 (70)
T ss_dssp CHHHHHHHHHHHHHCSSC--CTTHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCC--CHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 999999999999974998--98999999998379899935702877
No 13
>>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis} (A:248-344)
Probab=23.39 E-value=53 Score=14.43 Aligned_cols=36 Identities=3% Similarity=0.071 Sum_probs=22.0
Q ss_pred HHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 999999468917999999488999806756999999
Q gi|254780946|r 45 TMLESIIEEDDSNLFKWFTGMEKPPEYLRTPIFKKI 80 (98)
Q Consensus 45 ~~f~~LL~~~D~dL~~wl~~~~~~p~~~~~~ii~~I 80 (98)
+.|..++..+|.++.+|+.--...|......+.+..
T Consensus 5 ~~yq~~m~i~D~~v~~y~~llT~l~~~eI~~l~~~~ 40 (97)
T 2jan_A 5 AWYQYFVNTADADVIRYLRWFTFLSADELAELEQAT 40 (97)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 888675026899999999862131135777899875
No 14
>>1xrx_A SEQA protein; protein filament, LEFT-handed helix, DNA replication inhibitor; 2.15A {Escherichia coli} (A:)
Probab=23.29 E-value=50 Score=14.58 Aligned_cols=33 Identities=12% Similarity=0.275 Sum_probs=23.4
Q ss_pred CCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 917999999488999806756999999999982
Q gi|254780946|r 54 DDSNLFKWFTGMEKPPEYLRTPIFKKIYDYYSN 86 (98)
Q Consensus 54 ~D~dL~~wl~~~~~~p~~~~~~ii~~I~~f~~~ 86 (98)
=|.|||.++..+..--.+--..|++++.++...
T Consensus 6 vDeeLYryIAs~T~~IGESASdILRRlL~~~~~ 38 (50)
T 1xrx_A 6 VDDELYSYIASHTKHIGESASDILRRXLKFSAA 38 (50)
T ss_dssp ECHHHHHHHHTTCSSTTCCHHHHHHHHHTC---
T ss_pred ECHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCC
T ss_conf 109999999986546324799999999758866
No 15
>>3euk_L Chromosome partition protein MUKE; MUKB, MUKF, chromosome condensation, condensin, SMC, non-SMC subunit, ABC-type ATPase, WHD, ATP; HET: ATG; 4.00A {Haemophilus ducreyi} (L:84-238)
Probab=22.44 E-value=56 Score=14.32 Aligned_cols=76 Identities=18% Similarity=0.291 Sum_probs=49.0
Q ss_pred HCCHHHHHHHHHHHHHHHHCC---CC----HHHHHHHHHHHCC-CCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 407899999999999998202---99----9999999999468-917999999488999806756999999999982277
Q gi|254780946|r 18 RRGTREMDLILGSFVDHFILE---LS----SVELTMLESIIEE-DDSNLFKWFTGMEKPPEYLRTPIFKKIYDYYSNNLD 89 (98)
Q Consensus 18 rRG~kElDllL~~F~~~~~~~---l~----~~el~~f~~LL~~-~D~dL~~wl~~~~~~p~~~~~~ii~~I~~f~~~~~~ 89 (98)
|+-+-|+|.+.|.-.-.-|-+ +. -.....|++|+.. ++.-|...+..+..-.+.....+.++++.- .+++.
T Consensus 1 rsvLSEldMlVGkvLc~LyLsperLa~~gift~qeL~deL~~ladE~kllklvn~R~~gsDlD~~Kl~Ekvr~s-L~RLr 79 (155)
T 3euk_L 1 RSAMSEMEMLVGKVLCYLYLSPERLAQQGIFSQDDVYEELLNLADENKLLKAVNPRSTGSDLDRAKLAEKVGGA-LRRLA 79 (155)
T ss_dssp BCCCCHHHHHHHHHHHHHHTSTTSGGGTTCBCSHHHHHHHHC---------------------CCSHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHCCCEEEHHHHHHHHHHHHCHHHHHHHHCCCCCCCHHHHHHHHHHHHHH-HHHHH
T ss_conf 76644889899889999706998961478021899999998630579999987278998614189999999999-99988
Q ss_pred HHHHH
Q ss_conf 65655
Q gi|254780946|r 90 RKNML 94 (98)
Q Consensus 90 ~~~~~ 94 (98)
|.+|.
T Consensus 80 RlgmI 84 (155)
T 3euk_L 80 RIGII 84 (155)
T ss_dssp HTTSE
T ss_pred HCCCE
T ss_conf 55756
Done!